View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_20 (Length: 367)
Name: NF19122_low_20
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 31949166 - 31948824
Alignment:
| Q |
11 |
cacagacgaagcaacttgtagaccaaaccctcttgcaaacgaagaaggaagccttccctt-----acgctacacaaacactcatcagtgagcaaatactt |
105 |
Q |
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| T |
31949166 |
cacaaacgaagcaacttgtagaccaaaccctcttgcaaacgaagaaggaagccttcccttcccttacgctacacaaacactcatcagtgagcaaatactt |
31949067 |
T |
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| Q |
106 |
tggtacgtgagtcagttgcaaagtaattaaatgatttcaagtttaacatatcataatatacatcaaatggagtatcatccattatagcaactaactaagg |
205 |
Q |
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| T |
31949066 |
tggtacgtgagtcagttgcaaagtaattaaatgatttcaagtttaacatatcataatatacatcaaatggagtatcatccattatagcaactaactaagg |
31948967 |
T |
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| Q |
206 |
ctccaaccagatatggaataaataagggatttattgaccttcaagaacgtgtttcaatggaaatcttgttccaatgaactaaacaatatggcatataaca |
305 |
Q |
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| T |
31948966 |
ctccaaccagatatggaataaataagggatttattgaccttcaagaacgtgtttcaatggaaatcttgttccaatgaactaaacaatatggcatataaca |
31948867 |
T |
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| Q |
306 |
cattaaacaaaaacacagtttgactgtataacaactcacatag |
348 |
Q |
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| T |
31948866 |
cattaaacaaaaacacagtttgactgtataacaactcacatag |
31948824 |
T |
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