View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_23 (Length: 341)
Name: NF19122_low_23
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 55083362 - 55083669
Alignment:
| Q |
16 |
atatgcaattttgtctagagttttcgtttgttaactcaagcatatagcttcttcnnnnnnnnnnnnaaggttcaagcatatagatatatgctactaacaa |
115 |
Q |
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| T |
55083362 |
atatgcaattttgtctagagttttcgtttgttaactcaagcatatagcttcttctttttgttttttaaggttcaagcatatagatatatggtactaacaa |
55083461 |
T |
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| Q |
116 |
atttcttagccttagagatttttgttaacaaaaacttgtgcttcttgcatttatttctttgtttgggttaaaattggacttgcatcctgattagtttaga |
215 |
Q |
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| T |
55083462 |
atttcttagctttagagatttttgttaacaaaaacttgtgcttcttgcatttatttctttgtttgggttaaaattggacttgcatcctgattagtttaga |
55083561 |
T |
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| Q |
216 |
acaaatgttcttaagttttgcactgaaaataatgataatcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagt |
315 |
Q |
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||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55083562 |
acaaatgttattaagttttgcactgaaaatattcataatcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagt |
55083661 |
T |
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| Q |
316 |
ggttgaca |
323 |
Q |
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|||||||| |
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| T |
55083662 |
ggttgaca |
55083669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 50907797 - 50907867
Alignment:
| Q |
254 |
tcataaggtattt-ggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgaca |
323 |
Q |
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| T |
50907797 |
tcataaggtattttggtcggaaatgtggatctaaccaattaggtttgcatcacaaagatgagtggttgaca |
50907867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 38041084 - 38041032
Alignment:
| Q |
254 |
tcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcaca |
306 |
Q |
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| T |
38041084 |
tcataaggtatttggtaggaaatgtgaatcgaaccaattaggtttccatcaca |
38041032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 38029705 - 38029661
Alignment:
| Q |
230 |
gttttgcactgaaaataatgataat-cataaggtatttggtagga |
273 |
Q |
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| T |
38029705 |
gttttgcacagaaaataatcataattcataaggtatttggtagga |
38029661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 3071898 - 3071836
Alignment:
| Q |
261 |
gtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgaca |
323 |
Q |
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|||||||||||||||| ||||||||| | |||||||||| |||||| |||||||||||||||| |
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| T |
3071898 |
gtatttggtaggaaatgtggatctaatctattaggtttccatcacaaagatgagtggttgaca |
3071836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 21605696 - 21605652
Alignment:
| Q |
230 |
gttttgcactgaaaataatgataat-cataaggtatttggtagga |
273 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
21605696 |
gttttgcacagaaaataatcataattcataaggtatttggtagga |
21605652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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