View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_31 (Length: 260)
Name: NF19122_low_31
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_31 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 35168287 - 35168546
Alignment:
| Q |
1 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168287 |
cataggacctctcttgacgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
35168386 |
T |
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| Q |
101 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168387 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
35168486 |
T |
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| Q |
201 |
tgagtccccaagctgaatccaattagctctagatttctagatccatatcttctcccctat |
260 |
Q |
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| T |
35168487 |
tgagtccccaagctgaatccaattagctctagatttctagatccatatctgctcctctat |
35168546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 30282285 - 30282545
Alignment:
| Q |
1 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
100 |
Q |
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|||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282285 |
cataggacctcttttaacaatatttttgtccaccataggtaaagaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
30282384 |
T |
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| Q |
101 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
200 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
30282385 |
aggttatgcttgtcaattctggtgtcatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
30282484 |
T |
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| Q |
201 |
t-gagtccccaagctgaatccaattagctctagatttctagatccatatcttctcccctat |
260 |
Q |
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| T |
30282485 |
tcgagtccccaagctgaatccaattagctctagacttctgcatccatatcttctcctctat |
30282545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 33633268 - 33633528
Alignment:
| Q |
1 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
100 |
Q |
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|||||||||||| || | | ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633268 |
cataggacctcttttaacaacatttttgtccaccataggtaatgaatcaacggaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
33633367 |
T |
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| Q |
101 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
33633368 |
aggttatgcttgtcaattctggtgccatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
33633467 |
T |
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| Q |
201 |
t-gagtccccaagctgaatccaattagctctagatttctagatccatatcttctcccctat |
260 |
Q |
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| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
33633468 |
tcgagtccccaagctgaatccaattagctctagacttctgcatccatatcttctcctctat |
33633528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 18263208 - 18263277
Alignment:
| Q |
20 |
atatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctc |
90 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
18263208 |
atatttttgtccaccataggttatgaatcaacggaactacccatcaatttt-aatagaagcctctaatctc |
18263277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 3940019 - 3940279
Alignment:
| Q |
1 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
100 |
Q |
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|||||||||||| || | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940019 |
cataggacctcttttaacaatatttttgtccaccataggtaatgaatcaacggaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
3940118 |
T |
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| Q |
101 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
200 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
3940119 |
aggttatgcttgtcaattctggtgtcatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
3940218 |
T |
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| Q |
201 |
t-gagtccccaagctgaatccaattagctctagatttctagatccatatcttctcccctat |
260 |
Q |
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| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
3940219 |
tcgagtccccaagctgaatccaattagctctagacttctgcatccatatcttctcctctat |
3940279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 23121469 - 23121372
Alignment:
| Q |
155 |
ttctgacatcttctttcctttgcaaaggcatggaaaaattttgtgtt-gagtccccaagctgaatccaattagctctagatttctagatccatatctt |
251 |
Q |
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|||||||||||||| || |||||| ||||||| || |||||||| || || |||||||| || ||||| || ||||| ||||||| | ||||||||| |
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| T |
23121469 |
ttctgacatcttctctcttttgcataggcatgaaagaattttgtattagaatccccaagttggatccagtttgctcttgatttctgaagccatatctt |
23121372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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