View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_39 (Length: 228)
Name: NF19122_low_39
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 17696248 - 17696362
Alignment:
| Q |
24 |
taaattagctatcaattactcaatataaaaacaacccaagtgaagaaaaaatgggttttaaggatttgatagaagaaaggaatgaatctttgacaaacta |
123 |
Q |
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| T |
17696248 |
taaattagctatcaattactcaatataaaa-caacccaagtgaagaaaaaatcggttttaaggatctgatagaagaaaggaatgaatctttgacaaacta |
17696346 |
T |
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| Q |
124 |
aagaaaagaggttgaa |
139 |
Q |
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| T |
17696347 |
aagaaaagaggttgaa |
17696362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 17696426 - 17696506
Alignment:
| Q |
134 |
gttgaatgagatcaatttgattttggttgaatgagacgtaattttatggggttggtgatgaaaaggggaagaaagtttttg |
214 |
Q |
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| T |
17696426 |
gttgaatgagatcaatttgattttggttgaatgagacgtaattttatggggttggtgatgaaaaggggaagaaagtttttg |
17696506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 30401288 - 30401221
Alignment:
| Q |
69 |
aaaaaatgggttttaaggatttgatagaagaaaggaatgaatctttgacaaactaaagaaaagaggtt |
136 |
Q |
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| T |
30401288 |
aaaaaatcgattttaaggacttgatagaagaaaatattgaatctttgacaaaccaaagaaaacaggtt |
30401221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 30407845 - 30407778
Alignment:
| Q |
69 |
aaaaaatgggttttaaggatttgatagaagaaaggaatgaatctttgacaaactaaagaaaagaggtt |
136 |
Q |
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| T |
30407845 |
aaaaaatcgattttaaggacttgatagaagaaaatattgaatctttgacaaaccaaagaaaacaggtt |
30407778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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