View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19122_low_40 (Length: 226)

Name: NF19122_low_40
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19122_low_40
NF19122_low_40
[»] chr4 (4 HSPs)
chr4 (16-220)||(32348821-32349025)
chr4 (175-214)||(46216277-46216316)
chr4 (178-220)||(34104923-34104965)
chr4 (140-220)||(52619577-52619657)
[»] chr7 (5 HSPs)
chr7 (51-220)||(19511875-19512045)
chr7 (66-220)||(30802287-30802441)
chr7 (174-217)||(7319827-7319870)
chr7 (178-217)||(33822038-33822077)
chr7 (129-217)||(14746693-14746778)
[»] chr5 (3 HSPs)
chr5 (52-220)||(5909576-5909745)
chr5 (106-220)||(22179492-22179606)
chr5 (168-220)||(379488-379540)
[»] chr1 (4 HSPs)
chr1 (52-217)||(38204383-38204549)
chr1 (66-199)||(13273641-13273773)
chr1 (176-219)||(48380416-48380459)
chr1 (173-221)||(15283311-15283359)
[»] chr2 (3 HSPs)
chr2 (112-220)||(44941327-44941434)
chr2 (167-217)||(7300252-7300302)
chr2 (175-217)||(856278-856320)
[»] scaffold0057 (1 HSPs)
scaffold0057 (167-217)||(3449-3499)
[»] chr8 (2 HSPs)
chr8 (168-219)||(15438744-15438795)
chr8 (168-219)||(15530048-15530099)
[»] chr6 (4 HSPs)
chr6 (130-220)||(31706306-31706398)
chr6 (168-220)||(6936967-6937019)
chr6 (176-217)||(17720409-17720450)
chr6 (173-217)||(32185265-32185309)
[»] chr3 (5 HSPs)
chr3 (171-217)||(46249373-46249419)
chr3 (171-220)||(4963942-4963991)
chr3 (171-220)||(14306850-14306899)
chr3 (179-220)||(31674516-31674557)
chr3 (168-220)||(35216414-35216466)
[»] scaffold0321 (1 HSPs)
scaffold0321 (168-220)||(17687-17739)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 32349025 - 32348821
Alignment:
Q  16 attacaattcttttatcaaatttacaaattaacacatttttgtttgagatactaaaatgagatatattaacaacggcggtagaggttttccagtataagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  32349025 attacaattcttttatcaaatttacaaattaacacattttttttttagaaactaaaatgggatatattaacaacggcggtagaggtttcccagtacaagg 32348926  T
Q  116 tataccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  32348925 tgtaccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaaggatccgaccaccat 32348826  T
Q  216 ctctg 220  Q
    |||||    
T  32348825 ctctg 32348821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 46216277 - 46216316
Alignment:
Q  175 gttagtcgatacccaaacaaatcaaagagtccgaccacca 214  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  46216277 gttagtcgatacccaaacaaatcaaagggttcgaccacca 46216316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 34104923 - 34104965
Alignment:
Q  178 agtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    |||||||||||||||| | ||||| ||||||||||||||||||    
T  34104923 agtcgatacccaaacataacaaagggtccgaccaccatctctg 34104965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 52619657 - 52619577
Alignment:
Q  140 aacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||| || |||||| ||||  |||||  |||||| ||||||||||||||||    |||| ||||||||||||||||||    
T  52619657 aacaaacagttaatacagagtaattacaacaaaaggtcagtcgatacccaaacactgaaaagggtccgaccaccatctctg 52619577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 19511875 - 19512045
Alignment:
Q  51 atttttgtttgagatactaaaatgagatatattaacaacggcggtagaggttttccagtataaggtataccaagaaactcaccccaaaaaacaaaccgtc 150  Q
    |||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  19511875 atttttttttaagaaactaaaataagatatattaacaacggcggtagaggttttccagtacaaggtgtaccaagaaactcaccccaaaaaactaaccgtc 19511974  T
Q  151 aatacaaagtatatac-aaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||| || ||||||||||||||||||    
T  19511975 aatacaaagtatatacaaaacaaaggttattcgatacccaaacaattcatagggtccgaccaccatctctg 19512045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 30802441 - 30802287
Alignment:
Q  66 actaaaatgagatatattaacaacggcggtagaggttttccagtataaggtataccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatata 165  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||     
T  30802441 actaaaatgagatatattaacaacggcggtagaggttccccagtacaaggtgtaccaagaaactcaccccaaaaaacaaactgtcaatacaaagtatatg 30802342  T
Q  166 caaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  30802341 aaaacaaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctg 30802287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 7319870 - 7319827
Alignment:
Q  174 ggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  7319870 ggttagtcgatacccaaacaaatcatagggtccgaccaccatct 7319827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 33822077 - 33822038
Alignment:
Q  178 agtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  33822077 agtcgatacccaaacaaatcaaagggtccgactaccatct 33822038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 14746693 - 14746778
Alignment:
Q  129 tcaccccaaaaaacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||| ||||||| |||| |||||| |   |||||| | | |||||||||||||||||||||  || | |||||||||||||||    
T  14746693 tcaccccaaagaacaaacagtcactacaaaat---tacaaaaataagttagtcgatacccaaacaaagtaacgggtccgaccaccatct 14746778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 5909745 - 5909576
Alignment:
Q  52 tttttgtttgagatactaaaatgagatatattaacaacggcggtagaggttttccagtataaggtataccaagaaactcaccccaaaaaacaaaccgtca 151  Q
    ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5909745 tttttttttaagaaactaaaatgggatatattaacaacggcggtagaggttccccagtacaaggtgtaccaagaaactcaccccaaaaaacaaaccgtca 5909646  T
Q  152 atacaaagtatatac-aaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    | ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  5909645 agacaaagtatatacaaaacaaaggttagttgatacccaaacaaatcaaagggtccgaccaccatctctg 5909576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 22179606 - 22179492
Alignment:
Q  106 cagtataaggtataccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaagagtc 205  Q
    ||||||||||  ||| ||| ||| |||||||| |||||||| |||| || || |||||||||||||||||| ||||||||||||||||||| |||  |||    
T  22179606 cagtataaggagtactaaggaacccaccccaagaaacaaactgtcactataatgtatatacaaacaaaggtcagtcgatacccaaacaaattaaatggtc 22179507  T
Q  206 cgaccaccatctctg 220  Q
    |||| ||||||||||    
T  22179506 cgactaccatctctg 22179492  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 379488 - 379540
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||| |||||    
T  379488 aacaaaggtcagtcgatacccaaacaatacaaagggtccgaccaccaactctg 379540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 38204549 - 38204383
Alignment:
Q  52 tttttgtttgagatactaaaatgagatatattaacaacggcggtagaggttttccagtataaggtataccaagaaactcaccccaaaaaacaaaccgtca 151  Q
    ||||| ||| ||| |||||||||||||||||||| ||||  |||| ||||    ||||| ||||| |||||   ||| |||||||| || ||||  ||||    
T  38204549 tttttttttaagaaactaaaatgagatatattaataacgatggtaaaggtccctcagtagaaggtgtaccagagaacccaccccaagaaccaaagtgtca 38204450  T
Q  152 atacaaagtatatacaaa-caaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  38204449 atacaaaatatatacaaatcaaaggctagtcgatacccaaacaaatcaaagggtccgaccaccatct 38204383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 13273641 - 13273773
Alignment:
Q  66 actaaaatgagatatattaacaacggcggtagaggttttccagtataaggtataccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatata 165  Q
    |||||||||| ||||||||||||||||||||   |||   ||||| ||||| ||||| | ||| |||||||| ||||||||||||||||||| |||||||    
T  13273641 actaaaatgaaatatattaacaacggcggtaattgttcctcagtacaaggtgtaccagggaac-caccccaagaaacaaaccgtcaatacaatgtatata 13273739  T
Q  166 caaacaaaggttagtcgatacccaaacaaatcaa 199  Q
     |||||| ||| ||| ||||||||||||||||||    
T  13273740 taaacaatggtcagttgatacccaaacaaatcaa 13273773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 48380416 - 48380459
Alignment:
Q  176 ttagtcgatacccaaacaaatcaaagagtccgaccaccatctct 219  Q
    |||| ||||||||||||| | |||||||||||||||||||||||    
T  48380416 ttagccgatacccaaacataacaaagagtccgaccaccatctct 48380459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 15283359 - 15283311
Alignment:
Q  173 aggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctgc 221  Q
    |||| |||||||| |||||||| |||| | |||||||||||||||||||    
T  15283359 aggtcagtcgatatccaaacaagtcaaggggtccgaccaccatctctgc 15283311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 44941434 - 44941327
Alignment:
Q  112 aaggtataccaagaaactcaccccaaaaaacaaaccgtcaatacaaagtatatacaaacaaaggttagtcgatacccaaacaaatcaaagagtccgacca 211  Q
    ||||| ||||||| ||| |||||||| || |||||||| |||||||||||||||||||  ||||||||| ||||| |||||| |||||||  ||||||||    
T  44941434 aaggtgtaccaaggaacccaccccaagaaccaaaccgttaatacaaagtatatacaaa-gaaggttagttgatactcaaacacatcaaaggatccgacca 44941336  T
Q  212 ccatctctg 220  Q
    |||||||||    
T  44941335 ccatctctg 44941327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 7300252 - 7300302
Alignment:
Q  167 aaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||| |||||||||||||||| | ||||| |||||||||||||||    
T  7300252 aaacaaaggtcagtcgatacccaaacataacaaagggtccgaccaccatct 7300302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 856320 - 856278
Alignment:
Q  175 gttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||||||||||||||  || |||||||||||||||||    
T  856320 gttagtcgatacccaaacaaagtaacgagtccgaccaccatct 856278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 3499 - 3449
Alignment:
Q  167 aaacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  3499 aaacaaaggtcagtcgatacccaaacaaatcaacgggtccgaccaccatct 3449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 15438744 - 15438795
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctct 219  Q
    ||||||||| |||||||||||||||||| || || |||||||||||||||||    
T  15438744 aacaaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctct 15438795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 15530048 - 15530099
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctct 219  Q
    ||||||||| |||||||||||||||||| || || |||||||||||||||||    
T  15530048 aacaaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctct 15530099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 31706306 - 31706398
Alignment:
Q  130 caccccaaaaaacaaaccgtcaatacaaagtatatacaaa---caaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||||||||||||  |||| |||||| |||||||||    ||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  31706306 caccccaaaaaacaaaatgtca-tacaaaatatatacaaggatcaaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctg 31706398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 6936967 - 6937019
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||||| ||||||||||||||||||||| || ||| |||| |||||||||    
T  6936967 aacaaaggtcagtcgatacccaaacaaatcatagggtctgaccgccatctctg 6937019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 17720409 - 17720450
Alignment:
Q  176 ttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    ||||||||||||||||||||| || | |||||||||||||||    
T  17720409 ttagtcgatacccaaacaaattaacgggtccgaccaccatct 17720450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 32185265 - 32185309
Alignment:
Q  173 aggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||||||||||| ||||||| |||| | |||||||||||||||    
T  32185265 aggttagtcgatactcaaacaagtcaaggggtccgaccaccatct 32185309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 46249419 - 46249373
Alignment:
Q  171 aaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatct 217  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||    
T  46249419 aaaggtcagtcgatacccaaacaaagtaaagggtccgaccaccatct 46249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 4963942 - 4963991
Alignment:
Q  171 aaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    |||||| |||||||||||| |||||  |||| ||||||||||||||||||    
T  4963942 aaaggtcagtcgatacccagacaaagtaaagggtccgaccaccatctctg 4963991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 14306850 - 14306899
Alignment:
Q  171 aaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    |||||| ||||||||||||||||||  |||| || |||||||||||||||    
T  14306850 aaaggtcagtcgatacccaaacaaaataaagggttcgaccaccatctctg 14306899  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 31674516 - 31674557
Alignment:
Q  179 gtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  31674516 gtcgatacccaaacaaagcatagagtccgaccaccacctctg 31674557  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 35216466 - 35216414
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    ||||||||| |||||||||||||||||  || || |||| |||||||||||||    
T  35216466 aacaaaggtcagtcgatacccaaacaatgcatagggtccaaccaccatctctg 35216414  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 17739 - 17687
Alignment:
Q  168 aacaaaggttagtcgatacccaaacaaatcaaagagtccgaccaccatctctg 220  Q
    |||||| || |||||||||||||||||  ||||| |||||||||||| |||||    
T  17739 aacaaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctg 17687  T

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