View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_43 (Length: 202)
Name: NF19122_low_43
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 24525480 - 24525668
Alignment:
| Q |
5 |
gaattcagacacttcttctcttcaaattcaaacttccttttatttcttgcactgcaagacattgatccgcaagcttttgtgacattttcctttcctttgc |
104 |
Q |
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| T |
24525480 |
gaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactgcaagacattgatccacaagcttttgtgacattttcctttcctttgc |
24525579 |
T |
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| Q |
105 |
ttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagtttcccatctttcctccaaagatttccacttcatctca |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
24525580 |
ttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagctgcccatctttcctccaaagatttccacttcatctca |
24525668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9123608 - 9123800
Alignment:
| Q |
1 |
cacggaattcagacacttcttctcttcaaattcaaacttccttttatttcttgcactgcaagacattgatccgcaagcttttgtgacattttcctttcct |
100 |
Q |
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| T |
9123608 |
cacggaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcct |
9123707 |
T |
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| Q |
101 |
ttgcttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagtttcccatctttcctccaaagatttccacttcatctca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
9123708 |
ttgcttatgtgacatacttctgtgatattttcttctttgttgttttgtctctcagctgcccatctttcctccaaagatttccacttcatctca |
9123800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9131715 - 9131907
Alignment:
| Q |
1 |
cacggaattcagacacttcttctcttcaaattcaaacttccttttatttcttgcactgcaagacattgatccgcaagcttttgtgacattttcctttcct |
100 |
Q |
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| T |
9131715 |
cacggaattcggacacttcttctcttcaaattcaaacttccttttatttcttgcactacaagacattgatccacaagcttttgtgacattttcctttcct |
9131814 |
T |
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| Q |
101 |
ttgcttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagtttcccatctttcctccaaagatttccacttcatctca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
9131815 |
ttgcttatgtgacatacttctgtgatattttcttctttgttgttttgtctctcagctgcccatctttcctccaaagatttccacttcatctca |
9131907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 9113578 - 9113702
Alignment:
| Q |
69 |
atccgcaagcttttgtgacattttcctttcctttgcttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagtttcccatctttc |
168 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
9113578 |
atccacaagcttttgtgacattttcctttcctttgcttatgtgacatacttctgtgatattttcttctttcttgttttgtctctcagctgcccatctttc |
9113677 |
T |
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| Q |
169 |
ctccaaagatttccacttcatctca |
193 |
Q |
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| T |
9113678 |
ctccaaagatttccacttcatctca |
9113702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 39814777 - 39814712
Alignment:
| Q |
128 |
ttttcttctttcttgttttgtctctcagtttcccatctttcctccaaagatttccacttcatctca |
193 |
Q |
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||||||||||| |||||||||||||||| | ||||| |||||||||| | |||||||||||||||| |
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| T |
39814777 |
ttttcttctttgttgttttgtctctcagctgcccatttttcctccaagggtttccacttcatctca |
39814712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 39814861 - 39814788
Alignment:
| Q |
29 |
aattcaaacttccttttatttcttgcactgcaagacattgatccgcaagcttttgtgacattttcctttccttt |
102 |
Q |
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|||||||||||||||||||||||||||| || |||| ||||| ||| |||||||||||||||| ||| |||| |
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| T |
39814861 |
aattcaaacttccttttatttcttgcaccacatgacactgatctacaaacttttgtgacattttcatttgcttt |
39814788 |
T |
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