View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19122_low_5 (Length: 723)
Name: NF19122_low_5
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 105 - 481
Target Start/End: Complemental strand, 16087805 - 16087433
Alignment:
| Q |
105 |
ttgtgttgattttaaaatttctaccgttcaaattgtgatcttggttttttaaactattattttgagcaaaatgtgtttgagacaagttaacatgaaatta |
204 |
Q |
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| T |
16087805 |
ttgtgttgattttaaa-tttctaccat-caaattgtgatcttggttttt--aactattattttgagcaaaatgtgtttgagacaagttaacgtgaaatta |
16087710 |
T |
|
| Q |
205 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
304 |
Q |
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| T |
16087709 |
acaaatagaaatattttattagatgtggattacttactatgtcatcttttgataaactttaattagtgaaatattattttaaacttggttctcatgaata |
16087610 |
T |
|
| Q |
305 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
404 |
Q |
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| T |
16087609 |
tatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaactatgatagcatcttagaagttagaatactttaaacttaat |
16087510 |
T |
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| Q |
405 |
catcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttatgtctttaatccttggtgcttatt |
481 |
Q |
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| T |
16087509 |
catcatgagctgaagtagtgattcatgtaatattgttttgagctattttcttatgtctttaatccttggtgcttatt |
16087433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 549 - 708
Target Start/End: Complemental strand, 16087434 - 16087279
Alignment:
| Q |
549 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcattatgttggaacgtataatcatattataatgtaacgtgtaaagttctttgaac |
648 |
Q |
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| T |
16087434 |
ttagagtatgagagtgtgcgattttgactttctaaaatcttgagtcactatgttggaacatataatcatattataatgtg----gtaaagttctttgaac |
16087339 |
T |
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| Q |
649 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
708 |
Q |
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| T |
16087338 |
cgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgctggtttataggc |
16087279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 61 - 367
Target Start/End: Complemental strand, 38643343 - 38643027
Alignment:
| Q |
61 |
tgttgttatgatcacgatagcttgttattaatgaagatggacttttgtgttgattttaaaa----tttctaccgttcaaattgtgatcttggttttttaa |
156 |
Q |
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| T |
38643343 |
tgttattattattacgatagtttggtagtaatgaagatggacttttgtatggattttaaatctgttttctaccattaaaattgcactcttgatctcttaa |
38643244 |
T |
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| Q |
157 |
actattattttgagcaaaatgtgtttgagacaagttaacatgaaattaacaaatagaaatattttattagatgtggattacttactatgtcatcttttga |
256 |
Q |
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| T |
38643243 |
actattactttgagcaaaatacgtttgaaacaaattatagtgaaataaacagattgaaatattttattagatgtggaatacttactatgtcat-ttttga |
38643145 |
T |
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| Q |
257 |
taaactttaatt-agtgaaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattt------tgtgtg |
349 |
Q |
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|||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
38643144 |
taaagtttaatttagtgaaatattattttagtcttggttctcatgaatatgtgatatttatagtaggagaattcctttttaacatttttttttgtgtgtg |
38643045 |
T |
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| Q |
350 |
tgtataaatgagaactat |
367 |
Q |
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|||||||||||||||||| |
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| T |
38643044 |
tgtataaatgagaactat |
38643027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 19974422 - 19974514
Alignment:
| Q |
273 |
aaatattattttaaacttggttctcatgaatatatgatatttatagtgggagaattcctttttaacaattttgtgtgtgtataaatgagaacta |
366 |
Q |
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|||||||| |||||| ||||| ||||||| ||| || |||||| ||||||||||||| |||||||| ||||| ||||||||| |||||| |||| |
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| T |
19974422 |
aaatattaatttaaatttggtgctcatgagtatgtggtatttacagtgggagaattcttttttaacgatttt-tgtgtgtatgaatgaggacta |
19974514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 53838144 - 53838100
Alignment:
| Q |
363 |
actatgatagcatcttagaagttagaatactttaaacttaatcat |
407 |
Q |
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| T |
53838144 |
actatgatagcatcttagaagttagaataccttaagcttaatcat |
53838100 |
T |
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