View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19122_low_6 (Length: 666)
Name: NF19122_low_6
Description: NF19122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19122_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 27061865 - 27062501
Alignment:
| Q |
18 |
gtacaataatccagagaggatatacataattaacaaaacaattaataatgacaagtcatgacaatactataaaatagaaattcgggatacggtacaaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
27061865 |
gtacaataatccagagaggatatatataattaacaaaacaattaataatgacaagtcatgacaatactataaaatagaaattagggataaggtacaaatg |
27061964 |
T |
|
| Q |
118 |
aaatgaaaaagaatagaattcgatctgttgagtctttgaatcttccttgcattcagttaagacaattgcttttaagcacctcaaatttgctcaccttgat |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
27061965 |
aaatgaaaaagaatggaattcgatctgttgagtctttgaatcttccttgcattcagttaagacaattgcttttaagcacctcaaagttgctcaccttgat |
27062064 |
T |
|
| Q |
218 |
gaaaataaccagtctgaagttacgatccgatcggattttacacacaaatggtcaatcgggggttacaagtttacaacccaatcatgagcgaatcaacagc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27062065 |
gaaaataaccagtctgaagttacgatccgatcggattttacacacaaatagtcaatcgggggttacaagtttacaacccaatcatgagcgaatcaacagc |
27062164 |
T |
|
| Q |
318 |
acactgcaccagccaccatatccaaatccactttaatttctataaagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacgggga |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
27062165 |
ccgctgcaccagccaccatatccaaatccactttaatttctataaagaaaccttaaagcttcaatttcgtccttgaacttaggcatagcagcaacgggga |
27062264 |
T |
|
| Q |
418 |
gtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatctt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27062265 |
gtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattagctgatgagaaaatgcatgcatcgacggtggcaagcatctt |
27062364 |
T |
|
| Q |
518 |
gcatggtgcaggtagaaaattcactaattcataacttccaaaatctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcacca |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27062365 |
gcatggtgcaggtagaaaattcactaattcataacctccaaaatctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcacca |
27062464 |
T |
|
| Q |
618 |
ctagcttccaattccatgcttaaaccatcctcttgat |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
27062465 |
ctagcttccaattccatgcttaaaccatcctcttgat |
27062501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 362 - 633
Target Start/End: Original strand, 27040925 - 27041196
Alignment:
| Q |
362 |
aagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacggggagtgaagtaaatatcctaactcctccatccattgatggatcatga |
461 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
27040925 |
aagaaaacttaaagcttcaatttcgtccttgaacttaggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatagatcatga |
27041024 |
T |
|
| Q |
462 |
tcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacttccaaaat |
561 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| |||| ||||||||||||||||||||| || |||||||||||||||||| | | |||||| |
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|
| T |
27041025 |
tcatcaagtttattaggagatgagaaaatacacgtatcgagggtgccaagcatcttgcatggtgcagttaaaaaattcactaattcatagccttcaaaat |
27041124 |
T |
|
| Q |
562 |
ctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcaccactagcttccaattcca |
633 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27041125 |
ttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattcca |
27041196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 360 - 654
Target Start/End: Original strand, 27069274 - 27069568
Alignment:
| Q |
360 |
taaagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacggggagtgaagtaaatatcctaactcctccatccattgatggatcat |
459 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| |||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
27069274 |
taaagaaaccttaaagcttcaatttcgtccttgaacttaggcatggcatcaacagggagtgatgtgaaaatcctaactcctccatccattgatggatcat |
27069373 |
T |
|
| Q |
460 |
gatcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacttccaaa |
559 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||| ||||| |||||||||||||| ||||| |||| |||||||| | |||||| | |||||| |
|
|
| T |
27069374 |
gatcatcaagtttattaggagacgagaaaatgcacgcatcaacggtagcaagcatcttgcacggtgctggtactaaattcacaacttcatagcctccaaa |
27069473 |
T |
|
| Q |
560 |
atctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcaccactagcttccaattccatgcttaaaccatcctcttgat |
654 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||| | ||| |||||||||||||| ||||||||||||||||| ||| | |||||||||| |
|
|
| T |
27069474 |
atctatattttcatgaaaacccaaatgcttccactctgtcaaaactgttactgcaccacttgcttccaattccatgctgaaatcctcctcttgat |
27069568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 414 - 633
Target Start/End: Original strand, 27085414 - 27085633
Alignment:
| Q |
414 |
gggagtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagca |
513 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |
|
|
| T |
27085414 |
gggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtgccaagca |
27085513 |
T |
|
| Q |
514 |
tcttgcatggtgcaggtagaaaattcactaattcataacttccaaaatctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgc |
613 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| | | |||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
27085514 |
tcttgcatggtgcagttaaaaaattcactaattcatagccttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgc |
27085613 |
T |
|
| Q |
614 |
accactagcttccaattcca |
633 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27085614 |
accactagcttccaattcca |
27085633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 464 - 654
Target Start/End: Original strand, 27056268 - 27056459
Alignment:
| Q |
464 |
atcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgca--ggtagaaaattcactaattcataacttccaaaat |
561 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||||||||||||| |||||||| || |||| |||||||||||||||||| | | |||||| |
|
|
| T |
27056268 |
atcaagtttattaggagatgagaaaatacacgtatcgagggtggcaagcatcatgcatggtacacaggtaaaaaattcactaattcatagccttcaaaat |
27056367 |
T |
|
| Q |
562 |
ctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcaccactagcttccaattccatgcttaaaccatcctcttgat |
654 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
27056368 |
ttaaattttcctgaaaatccaaatgtttcaattc-actagaaccgttactgcaccactatcttccaattccatgctcaaaccatcctcttgat |
27056459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 353 - 564
Target Start/End: Original strand, 27045255 - 27045466
Alignment:
| Q |
353 |
atttctataaagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacggggagtgaagtaaatatcctaactcctccatccattgat |
452 |
Q |
| |
|
||||| || ||| |||||||||||||||||||| ||||| ||| | ||||| |||| ||| |||||||| ||||| ||| |||||||||| | ||||||| |
|
|
| T |
27045255 |
atttcaattaagtaatcttaaagcttcaatttcctccttgaaccttggcatggcagcaacagggagtgatgtaaaaatcttaactcctcctttcattgat |
27045354 |
T |
|
| Q |
453 |
ggatcatgatcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataac |
552 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||||||||| | || | | |||| ||| ||||||||||| |||| |||||||||| ||||||| | |
|
|
| T |
27045355 |
ggatcatcatcatcaagtttaccaggagatgcgaaaatgcacccttccaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcatacc |
27045454 |
T |
|
| Q |
553 |
ttccaaaatcta |
564 |
Q |
| |
|
||||||||||| |
|
|
| T |
27045455 |
ctccaaaatcta |
27045466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 362 - 617
Target Start/End: Original strand, 27098001 - 27098259
Alignment:
| Q |
362 |
aagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacggggagtgaagtaaatatcctaactcctccatccattgatggatcatga |
461 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| ||||||| |||||| ||| |||| ||||| | |||||||||||||| | |
|
|
| T |
27098001 |
aagaaatcttaaagcttcaatttcctccttgaacttgggcatggcagcaacagggagtgtagtaaaaatcttaacccctcctttcattgatggatcatca |
27098100 |
T |
|
| Q |
462 |
tcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacttccaaaat |
561 |
Q |
| |
|
| |||| ||||||||| |||| ||||||| | || | | |||| ||| ||||||||||| |||| ||||||||| ||| | | ||||||| |
|
|
| T |
27098101 |
ttgtcaaatttattaggagatgtaaaaatgctaatttcaattgacgcaaacatgttgcatggtgctggtactaaattcactgcttcgttcccaccaaaat |
27098200 |
T |
|
| Q |
562 |
ctaaattt---tcctgaaaacccaaatgtttccactctgttagaaccgttactgcacca |
617 |
Q |
| |
|
||| |||| || ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27098201 |
ctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacca |
27098259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 27079617 - 27079693
Alignment:
| Q |
414 |
gggagtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattaggtgatgagaaaat |
490 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27079617 |
gggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaat |
27079693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 362 - 616
Target Start/End: Original strand, 27105000 - 27105257
Alignment:
| Q |
362 |
aagaaatcttaaagcttcaatttcgtccttaaacttaggcatagcagaaacggggagtgaagtaaatatcctaactcctccatccattgatggatcatga |
461 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| ||||||| |||||| ||| ||| ||||| | ||| |||||||||| | |
|
|
| T |
27105000 |
aagaaatcttaaagcttcaatttcctccttgaacttgggcatggcagcaacagggagtgtagtaaaaatcttaatccctcctttcatagatggatcatca |
27105099 |
T |
|
| Q |
462 |
tcatcaagtttattaggtgatgagaaaatgcatacatcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacttccaaaat |
561 |
Q |
| |
|
| |||| ||||||||| | || ||||||| | || | || |||| || ||||||||||| |||| ||||||||| ||||| | ||||||| |
|
|
| T |
27105100 |
ttgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcatggtgctggtactaaattcactgcttcatgcccaccaaaat |
27105199 |
T |
|
| Q |
562 |
ctaaattt---tcctgaaaacccaaatgtttccactctgttagaaccgttactgcacc |
616 |
Q |
| |
|
||| |||| || ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27105200 |
ctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
27105257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 27056182 - 27056227
Alignment:
| Q |
360 |
taaagaaatcttaaagcttcaatttcgtccttaaacttaggcatag |
405 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27056182 |
taaagaaaccttaaagcttcaatttcgtccttgaacttaggcatag |
27056227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 627
Target Start/End: Original strand, 19414221 - 19414277
Alignment:
| Q |
571 |
cctgaaaacccaaatgtttccactctgttagaaccgttactgcaccactagcttcca |
627 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||| |||||||||||||||| ||||| |
|
|
| T |
19414221 |
cctgaaagcccaaatgcttccactctgtcaaaactgttactgcaccactagattcca |
19414277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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