View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_1 (Length: 769)
Name: NF19123_high_1
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 9688618 - 9688238
Alignment:
| Q |
16 |
tggcctaatattttttaaaacgattgagccccttaaccttttgacatatacattttttaactaaataacttttgtaacaaagaaaatattggtgccnnnn |
115 |
Q |
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| T |
9688618 |
tggcctaatattttttaaaacgattgagccccttaaccttttgacatatacattttttaactaaataacttttgtaacaaagaaaatattggtgccaaaa |
9688519 |
T |
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| Q |
116 |
nnnn-tggaaccatgtccaatttcacaccataaacatgctcatagttgtcactagtatatgcaaacactttaacactcaagtcagattatgagtgaagtg |
214 |
Q |
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| T |
9688518 |
aaatatggaaccatgtccaatttcacaccataaacatgctcatagctgtcactagtatatgcaaactcttcaacac--aagtcagattttgagtgaagtg |
9688421 |
T |
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| Q |
215 |
ggtgaaaattttaatagaatggaatgtgtatctttcttctggtgcatagattctttcaaaggtagagtttgaggagaaattaacgagaaaacagttgagg |
314 |
Q |
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| T |
9688420 |
ggtgaaaattttaatagaatggaatgtgtacctttcttctagtgcatagattctttcaaaggtagagtttgaggagaaattaacgagaaaacagttgagg |
9688321 |
T |
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| Q |
315 |
ttgttgaggaatttctgttgtgatcgacctttgatatcttcatgatttggtgatcaattgttgagggttaacactcgactatc |
397 |
Q |
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| T |
9688320 |
ttgttgaggaatttctattgtgatcggcctttgatattttcatgatttggtgatcaattgttgagggttaacactcgactatc |
9688238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 459 - 755
Target Start/End: Complemental strand, 9688171 - 9687876
Alignment:
| Q |
459 |
acaccacactagttatacccaatacagaacttggtgtttaatcttttaactctcaatttgcacacttgttccaacaattgacaatacgtttgttacatgt |
558 |
Q |
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| T |
9688171 |
acaccacactagttataccaaatacagaacttggtgtttagtcttttaactctcaatttgcacacttgttccaacaattgacaatacgtttgttacatgt |
9688072 |
T |
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| Q |
559 |
accctagtaggagtctacaatggaattggcctaaacccacttcaaaatagtaacgaatcgcgaaaggtgattgctcaatagacccttgaattgctaaaat |
658 |
Q |
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| T |
9688071 |
accctagtaggagtctacaatggaattgacctaaacccacttcaaaatagtaacgaatcgtgaaaggtgattgctcaatagacccttgaattactaaaat |
9687972 |
T |
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| Q |
659 |
attcgcgaaaacaagcttcatgagttaagatccggtcgacattttaagctnnnnnnntacccatagaaagttgcgacccaatgggatgagtgaattc |
755 |
Q |
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| T |
9687971 |
attcgcgaaaacaagcttcatgagttaagatccggtcgacattttaagct-aaaaaatacccatagaaagttgcgacccaatgggatgagcgaattc |
9687876 |
T |
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