View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19123_high_12 (Length: 338)

Name: NF19123_high_12
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19123_high_12
NF19123_high_12
[»] chr5 (4 HSPs)
chr5 (34-323)||(7137072-7137361)
chr5 (20-170)||(41870663-41870813)
chr5 (181-318)||(14538812-14538949)
chr5 (42-89)||(14539050-14539097)
[»] chr4 (4 HSPs)
chr4 (25-257)||(4458822-4459064)
chr4 (20-116)||(36103069-36103165)
chr4 (181-316)||(4459676-4459811)
chr4 (177-257)||(18541918-18541997)
[»] chr3 (8 HSPs)
chr3 (69-294)||(15488560-15488795)
chr3 (20-170)||(1418851-1419001)
chr3 (20-170)||(30378166-30378316)
chr3 (177-309)||(15495426-15495559)
chr3 (44-161)||(53630865-53630982)
chr3 (40-136)||(41703610-41703706)
chr3 (69-170)||(31516585-31516686)
chr3 (177-257)||(53631008-53631088)
[»] chr7 (4 HSPs)
chr7 (20-171)||(15678955-15679106)
chr7 (20-170)||(12380525-12380675)
chr7 (39-112)||(23100546-23100619)
chr7 (100-170)||(24912686-24912758)
[»] chr2 (4 HSPs)
chr2 (20-170)||(18581607-18581757)
chr2 (20-170)||(38698054-38698204)
chr2 (20-146)||(13072549-13072675)
chr2 (54-170)||(5276058-5276170)
[»] chr1 (5 HSPs)
chr1 (20-170)||(9957877-9958027)
chr1 (20-170)||(32177815-32177965)
chr1 (35-228)||(31461220-31461423)
chr1 (40-171)||(35501048-35501179)
chr1 (177-257)||(10644726-10644805)
[»] chr8 (2 HSPs)
chr8 (20-147)||(17635176-17635300)
chr8 (177-256)||(42268812-42268891)
[»] chr6 (3 HSPs)
chr6 (25-116)||(31278712-31278801)
chr6 (177-257)||(31278561-31278645)
chr6 (40-170)||(12624161-12624291)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 34 - 323
Target Start/End: Original strand, 7137072 - 7137361
Alignment:
Q  34 atcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattt 133  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7137072 atcatcattgcttaattttctttaataattaacatatgagaaatgcctaaaatatttatcatcgagaaaattatgattcatttatccagtagatccattt 7137171  T
Q  134 tcaactagaatatcctttgacgtgttattaagattcttgatatataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctat 233  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7137172 tcaactggaatatcccttgacgtgttattaagattcttgatatataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctat 7137271  T
Q  234 atagaagacgaagaatttggcacctttgctgcattttgccaattttatgtttgtgtttctgcaaagttttcgtttctcaatttctgctgt 323  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7137272 atagaagacgaagaatttggcacctttgctgcgttttgccaattttatgtttgtgtttctgcaaagttttcgtttctcaatttctactgt 7137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 41870813 - 41870663
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    ||||||||| |||  ||| ||||||||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  41870813 tttcgatcattaatctcaccattgcttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 41870714  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| || |||||    
T  41870713 gaataggtcccttttcaactagaatatcccttgaggtgttatcaaaattct 41870663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 14538949 - 14538812
Alignment:
Q  181 atatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacctttgctgcattttgccaatttta 280  Q
    ||||||||||||| |||||||||||||||||||||  |  |||||||||| | |||| ||  |||| || || |||| ||| || ||||| || ||||||    
T  14538949 atatcaaaatgagaaatttcaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttgatgtatttttccgatttta 14538850  T
Q  281 tgtttgtgtttctgcaaagttttcgtttctcaatttct 318  Q
     |||||||||||| |||| ||||||||||||| |||||    
T  14538849 ggtttgtgtttctacaaaattttcgtttctcagtttct 14538812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 14539097 - 14539050
Alignment:
Q  42 tgcttaattttctttaataattgacatatgagaaatgcctaaaatatt 89  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  14539097 tgcttaattttcttgaataattggcatatgagaaatggctaaaatatt 14539050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 4459064 - 4458822
Alignment:
Q  25 atcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagta 124  Q
    ||||||||  ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||| || ||||    
T  4459064 atcactaatctcatcattgcttaattttcttaaataattggcatatgagaaatgcctaaaatatgtgtcattgggaaaattaagattcatttctctagta 4458965  T
Q  125 gacccattttcaactagaatatcctttgacgtgttattaagattct----------tgatatataaatatcaaaatgagtaatttcaatattagatgcat 214  Q
    |  |  |||||||||||||||||||||||||||||||  |||||||          |||   |||||||||||| |||| |||||||||||| |||||||    
T  4458964 ggtcatttttcaactagaatatcctttgacgtgttatcgagattctcccaatttcatgaatcataaatatcaaattgagcaatttcaatattggatgcat 4458865  T
Q  215 tcagcacatcatcacctatatagaagacgaagaatttggcacc 257  Q
    |  |||||||||| || | |||  |||||||| ||||||||||    
T  4458864 ttggcacatcatcgccaagatatgagacgaaggatttggcacc 4458822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 36103165 - 36103069
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcattt 116  Q
    |||| ||||||||  ||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| | |||||||| |||||||||    
T  36103165 tttcaatcactaatctcaccattgcttaattttctttaataattcacatatgagaaatacctaagatatttgtcattgggaaaattaagattcattt 36103069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 4459676 - 4459811
Alignment:
Q  181 atatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacctttgctgcattttgccaatttta 280  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||  | |||| |||| |||  ||||||||| ||  | ||| || || |||||     
T  4459676 atatcaaaatgagcaatttcaatattagatgcatttggcacatcatcactaagataggagacaaagggtttggcaccgttaatacatatttccgattttg 4459775  T
Q  281 tgtttgtgtttctgcaaagttttcgtttctcaattt 316  Q
     ||||   |||||||| |||||||||||||||||||    
T  4459776 cgtttacctttctgcagagttttcgtttctcaattt 4459811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 18541918 - 18541997
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacc 257  Q
    |||||||| ||||||||  |||||||||||||||| |||  ||||||||||||| | || | ||| |||| ||||||||||    
T  18541918 ataaatattaaaatgagctatttcaatattagatg-atttggcacatcatcaccaagattggagatgaaggatttggcacc 18541997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 69 - 294
Target Start/End: Original strand, 15488560 - 15488795
Alignment:
Q  69 atgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaactagaatatcctttgacgtgttattaagatt 168  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||| |    ||| |||||||||||||| ||||||  |||| ||||||| ||||||    
T  15488560 atgagaaatgcctaaaataattgtcattgagaaaattaagattcatttctatgataggcccattttcaactaaaatatctcttgatgtgttatcaagatt 15488659  T
Q  169 cttgatat----------ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacct 258  Q
    ||    ||          ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | || | |||||||| ||||||||||     
T  15488660 ctcccaatttctcggatcataaatatcaaaatgaggaatttcaatattagatgcatttaacacatcatcaccaagattgcagacgaaggatttggcacca 15488759  T
Q  259 ttgctgcattttgccaattttatgtttgtgtttctg 294  Q
    ||| |||||||| || ||||| |||||| |||||||    
T  15488760 ttgatgcatttttccgattttgtgtttgcgtttctg 15488795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 1418851 - 1419001
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  1418851 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 1418950  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  1418951 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 1419001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 30378316 - 30378166
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  30378316 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 30378217  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  30378216 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 30378166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 309
Target Start/End: Original strand, 15495426 - 15495559
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacctttgctgca-ttttgccaa 275  Q
    ||||||||||||| ||| ||||| |||||||||||||||  ||||||||||||| |||| | |||||||| ||||| |||  |||||||| |||| || |    
T  15495426 ataaatatcaaaacgagaaatttaaatattagatgcatttggcacatcatcaccaatattgtagacgaaggatttgacactcttgctgcattttttccga 15495525  T
Q  276 ttttatgtttgtgtttctgcaaagttttcgtttc 309  Q
    ||||  || || ||||||||||||||||||||||    
T  15495526 ttttgcgtctgcgtttctgcaaagttttcgtttc 15495559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 53630865 - 53630982
Alignment:
Q  44 cttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaactagaa 143  Q
    ||||||||||   |||||||| |||||||||||| |||||||||||||||||   |||||||| ||||||||| |  |||||||  ||||||||||||||    
T  53630865 cttaattttcacaaataattggcatatgagaaatacctaaaatatttgtcattaggaaaattaagattcatttctttagtagacttattttcaactagaa 53630964  T
Q  144 tatcctttgacgtgttat 161  Q
    |||| |||||||| ||||    
T  53630965 tatcttttgacgtcttat 53630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 41703706 - 41703610
Alignment:
Q  40 attgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttca 136  Q
    ||||||||||||| || |||||| ||||||||| |||||| |||||||||| |||| |||||||||| |||||||||||| || || ||| ||||||    
T  41703706 attgcttaatttttttaaataatcgacatatgataaatgcttaaaatatttatcattgagaaaattaagattcatttatctagaaggccccttttca 41703610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 31516585 - 31516686
Alignment:
Q  69 atgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaactagaatatcctttgacgtgttattaagatt 168  Q
    |||||| ||||||||||||| |||||| |||||||||| |||||||||    | |||||| ||||||||||||||||||  ||||  |||||| ||||||    
T  31516585 atgagagatgcctaaaatatctgtcattgagaaaattaagattcattttaataatagacctattttcaactagaatatctcttgatttgttatcaagatt 31516684  T
Q  169 ct 170  Q
    ||    
T  31516685 ct 31516686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 53631008 - 53631088
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacc 257  Q
    |||| |||| ||||||| |||||||||||||||||||||  | ||||||||| | | |||| |||| ||| |||| |||||    
T  53631008 ataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcatcgagataggagacaaaggatttcgcacc 53631088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 15678955 - 15679106
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  15678955 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 15679054  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattctt 171  Q
     | ||| |||  ||||||||||||||||| |||| ||||||| |||||||||    
T  15679055 gaataggccccctttcaactagaatatcccttgaggtgttatcaagattctt 15679106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 12380675 - 12380525
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  12380675 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 12380576  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||| ||||||||| |||| ||||||| ||||||||    
T  12380575 gaataggtcccttttcaacaagaatatcccttgaggtgttatcaagattct 12380525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 23100546 - 23100619
Alignment:
Q  39 cattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattc 112  Q
    |||| |||||| ||||| |||||||  |||||||||||||||||  ||||||||||  | |||||||| |||||    
T  23100546 catttcttaatgttcttgaataatttgcatatgagaaatgcctactatatttgtcaatgggaaaattaagattc 23100619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 24912758 - 24912686
Alignment:
Q  100 aaaattatgattcatttatccagt--agacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
    ||||||| |||||||||||| |||  ||| | |||||||||||||||||| |||||  |||||| ||||||||    
T  24912758 aaaattaagattcatttatctagtgtagaactattttcaactagaatatcatttgatttgttatcaagattct 24912686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 18581607 - 18581757
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  18581607 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 18581706  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  18581707 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 18581757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 38698204 - 38698054
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  38698204 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 38698105  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  38698104 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 38698054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 13072549 - 13072675
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| ||||  ||||||||||| ||||||| ||| |||| ||||| ||| |||| |||||||    ||||||| |||  |||||||    
T  13072549 tttcgatcactaatctcaccatttgttaattttcttgaataattcacacatgaaaaatgtctataataattgtcattagaaaaattaagatctatttatc 13072648  T
Q  120 cagtagacccattttcaactagaatat 146  Q
     ||||||||| |||| |||||||||||    
T  13072649 tagtagacccctttttaactagaatat 13072675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 5276170 - 5276058
Alignment:
Q  54 tttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaactagaatatcctttga 153  Q
    |||||||||| |||||||| |||| | ||| |||||||| | |||   ||||| |||||||||||| ||||| |   ||||||||||||||||||||| |    
T  5276170 tttaataattcacatatgaaaaatac-taagatatttgtgagcga---aattaagattcatttatctagtaggcaacttttcaactagaatatcctttaa 5276075  T
Q  154 cgtgttattaagattct 170  Q
      |||||| ||||||||    
T  5276074 attgttatcaagattct 5276058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 9958027 - 9957877
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  ||||||||||||||||| | |||||||||| | |||||||| ||||||||| ||    
T  9958027 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatgcctagagtatttgtcattgggaaaattaagattcatttctc 9957928  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  9957927 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 9957877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 32177815 - 32177965
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||  |||||||||||| |||| | |||||||||| | |||||||| ||||||||| ||    
T  32177815 tttcgatcactaatctcaccattacttaattttcttgaataattcgcatatgagaaatacctagagtatttgtcattgggaaaattaagattcatttctc 32177914  T
Q  120 cagtagacccattttcaactagaatatcctttgacgtgttattaagattct 170  Q
     | |||  || |||||||||||||||||| |||| ||||||| ||||||||    
T  32177915 gaataggtcccttttcaactagaatatcccttgaggtgttatcaagattct 32177965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 31461220 - 31461423
Alignment:
Q  35 tcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccatttt 134  Q
    ||||||||||||||||||||| ||||| | ||||  |||||||||||||||||||||||||    ||||||| |||||||||    | |||||| |||||    
T  31461220 tcatcattgcttaattttcttgaataactcacat--gagaaatgcctaaaatatttgtcattagaaaaattaagattcattttaaaaatagacctatttt 31461317  T
Q  135 caactagaatat--cctttgacgtgttattaagattcttgatat----------ataaatatcaaaatgagtaatttcaatattagatgcattcagcaca 222  Q
    ||||||||||||  | ||||| ||||||| || |||||  | ||          |||||||| |||||||| ||||| |||||||||||||||  |||||    
T  31461318 caactagaatatatcatttgatgtgttatcaaaattctccaaatttctcggatcataaatattaaaatgagcaattttaatattagatgcatttggcaca 31461417  T
Q  223 tcatca 228  Q
    ||||||    
T  31461418 tcatca 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 35501048 - 35501179
Alignment:
Q  40 attgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaact 139  Q
    |||| ||||||||||  |||||||  ||||||| |||||||||| |||| ||||||    ||||||| |||| |||| || ||||| || ||||| ||||    
T  35501048 attgtttaattttctcgaataattcgcatatgaaaaatgcctaatatatatgtcatttgaaaaattaggattaatttttctagtaggcctatttttaact 35501147  T
Q  140 agaatatcctttgacgtgttattaagattctt 171  Q
    ||||||||  |||||||||| | |||||||||    
T  35501148 agaatatcacttgacgtgttgtcaagattctt 35501179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 10644726 - 10644805
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacc 257  Q
    |||||||| |||||||| |||||||||||||||||||||  || |||||||||| | || | |||| ||||||||||||||    
T  10644726 ataaatattaaaatgagcaatttcaatattagatgcatttggc-catcatcaccaagattggagacaaagaatttggcacc 10644805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 17635176 - 17635300
Alignment:
Q  20 tttcgatcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatc 119  Q
    ||||||| |||||  |||| |||||||||||||||| |||||||  |||  |||||||| |||||||||||||||| || ||||||| ||||||||| ||    
T  17635176 tttcgattactaatctcattattgcttaattttcttgaataatttgcat--gagaaatgactaaaatatttgtcattga-aaaattaagattcatttctc 17635272  T
Q  120 cagtagacccattttcaactagaatatc 147  Q
     |||||  ||||||||||||||||||||    
T  17635273 tagtaggtccattttcaactagaatatc 17635300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 42268891 - 42268812
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcac 256  Q
    ||||||||||||| ||  |||||||||||||||||||||   |||||||||||  | |||  |||||||| |||||||||    
T  42268891 ataaatatcaaaacgataaatttcaatattagatgcatttgacacatcatcactaagatatgagacgaaggatttggcac 42268812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 31278801 - 31278712
Alignment:
Q  25 atcactaaaatcatcattgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcattt 116  Q
    ||||||||  ||||||||||||||||||||| ||||| |  |  |||||||||||||||||||||| |||| || ||||||| |||||||||    
T  31278801 atcactaatctcatcattgcttaattttcttgaataacttgc--atgagaaatgcctaaaatatttttcattgaaaaaattaagattcattt 31278712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 31278645 - 31278561
Alignment:
Q  177 ataaatatcaaaatgagtaatttcaatattagatgcattca----gcacatcatcacctatatagaagacgaagaatttggcacc 257  Q
    |||||||| |||||||| ||||||||||||||||||||| |    ||||||||||||| | |||  |||||||| ||||||||||    
T  31278645 ataaatattaaaatgagcaatttcaatattagatgcatttaattggcacatcatcaccaagatatgagacgaaggatttggcacc 31278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 12624291 - 12624161
Alignment:
Q  40 attgcttaattttctttaataattgacatatgagaaatgcctaaaatatttgtcatcgagaaaattatgattcatttatccagtagacccattttcaact 139  Q
    ||||||||| |||||  ||| |||  ||| ||| |||| | ||| ||||||||||| || ||||||| ||||||||| |  ||||||| | |||| || |    
T  12624291 attgcttaactttctggaatgattttcatttgataaatacttaagatatttgtcattgaaaaaattaagattcatttctttagtagactctttttaaagt 12624192  T
Q  140 agaatatcctttgacgtgttattaagattct 170  Q
    ||||||||||||||  |||||| ||||||||    
T  12624191 agaatatcctttgatttgttatcaagattct 12624161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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