View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19123_high_14 (Length: 327)

Name: NF19123_high_14
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19123_high_14
NF19123_high_14
[»] chr1 (1 HSPs)
chr1 (19-314)||(44716703-44716992)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 44716703 - 44716992
Alignment:
Q  19 ataagctaaatccaagaattaaggaatgtatgtatgcatgtatattcgagctagacagcttatctcaatgtgtaagtgaggtcaattagagtagacaacc 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716703 ataagctaaatgcaagaattaaggaatgtatgtatgcatgtatattcgagctagacagcttatctcaatgtgtaagtgaggtcaattagagtagacaacc 44716802  T
Q  119 aaatcttgttttttatttagtatcatatagtactgattgattagtaacattattttaaaagaaattgtttggtctacatataaatcaatatatacttatt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716803 aaatcttgttttttatttagtatcatatagtactaattgattagtaacattattttaaaagaaattgtttggtctacatataaatcaatatatacttatt 44716902  T
Q  219 ctatgatgtagccacttttttaactcaatataaattatatgtaacaacttgagctatatatatcttacttttgccccatctttcattagtatgcct 314  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44716903 ctatgatgtagccacttttttaactcaatata------atgtaacaacttgagctatatatatcttacttttgccccatctttcattagtatgcct 44716992  T

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