View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_19 (Length: 281)
Name: NF19123_high_19
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 42229963 - 42230085
Alignment:
| Q |
19 |
agggtggtcctgttggtggcacacgtgtttaaataaacatcattatccatataactacactttgtttcttg-tttttaataatattgtagtctcctagtt |
117 |
Q |
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| T |
42229963 |
agggtggtcctgttggtggcactcgtgtttaaataaatatcattatccatataactacactttgtttcttgttttttaataatattgtagtttcctagtt |
42230062 |
T |
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| Q |
118 |
tgggacacgggactatgttcctg |
140 |
Q |
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| T |
42230063 |
tgggacacgggactatgttcctg |
42230085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 42230113 - 42230213
Alignment:
| Q |
168 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcatct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
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| Q |
268 |
c |
268 |
Q |
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| T |
42230213 |
c |
42230213 |
T |
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