View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_2 (Length: 592)
Name: NF19123_high_2
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 13 - 576
Target Start/End: Complemental strand, 44903724 - 44903161
Alignment:
| Q |
13 |
aatatgtttggtcttaataagcttttgtatcataaacacttattacaagtttaattaagttgtaggacaaagtacctcctaaagaaatgtatatgaaggc |
112 |
Q |
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| T |
44903724 |
aatatgtttggtcttaataagcttttgtatcataaacacttattacaagtttaattaagttgtaggacaaagtacctcctaaagaaatgtatatgaaggc |
44903625 |
T |
|
| Q |
113 |
taagtcattgtcatcccaaaatgaatgaaatgattttgttaagcaactttctgaaattgtaaaacaacagacaagggaccctactgttgtcggataaagt |
212 |
Q |
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| T |
44903624 |
taagtcattgtcatctcaaaatgaatgaaatgattttgttaaggaactttctgaaattgtaaaacaacagacaagggaccctactgttgtcggataaagt |
44903525 |
T |
|
| Q |
213 |
gaacagaaacaaagtttcatgagacaaaagttagtaagccagcatagcaaatgacttgaaaccaatcggtcccctcttttatgtccccatttaagacaag |
312 |
Q |
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| T |
44903524 |
gaacagaaacaaagtttcatgagacaaaagttagtaagccagcatagcaaatgacttgaaaccaatcggtcccctcttttatgtccccatttaagacaag |
44903425 |
T |
|
| Q |
313 |
tgtgtgtttgctagtagatacaattctcattaatgcagtctaattctgaaaggaatgttacaccgttcttgcaagcattaaggaccctaaatgtagactg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903424 |
tgtgtgtttgctagtagatacaattctcattaatgcagtctaattctgaaaggaatgttacaccgttcttgcaagcattaaggaccctaaatgtagactg |
44903325 |
T |
|
| Q |
413 |
aagtatttttgttttcatacaaattgacagaatacagttagcagattaattttacaatggagaattgtggcaaaccagctcattagctggtaaaatatga |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44903324 |
aagtatttttgttttcatacaaattgacagaatacagttagcagattaattttacaatggagaattgtggcaaaccagctcattagctggtaaaatgtga |
44903225 |
T |
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| Q |
513 |
ttgtatgcatatagcaaaaccacatgcattcattctataactatccacagtgggtcctggttga |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44903224 |
ttgtatgcatatagcaaaaccacatgcattcattctataactatccacagtgggtcctggttga |
44903161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 10075802 - 10075979
Alignment:
| Q |
13 |
aatatgtttggtcttaataagcttttgtatcataaacacttattacaagtttaattaagttgtaggacaaagtacctcctaaagaaatgtatatgaaggc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10075802 |
aatatgtttggtcttaataagcttttgtatcataaacaattattacaagtttgattaagttgtaggacaaagtacctcctaaagaaatgtatatgaaggc |
10075901 |
T |
|
| Q |
113 |
taagtcattgtcatcccaaaatgaatgaaatgattttgttaagcaactttctgaaattgtaaaacaacagacaaggga |
190 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10075902 |
taagtcattgtcatcccaaaataaatgaaatgattttgttaagcaactttctgaaattgtaaaacaacagacaaggga |
10075979 |
T |
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