View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_24 (Length: 247)
Name: NF19123_high_24
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_24 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26618104 - 26618334
Alignment:
| Q |
1 |
atgcttgtagtagacttttaaagatattttgctgccattttagggttttttgcttataatcttggtatcacctctgctttacatgttgaaattatcggag |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26618104 |
atgcttgtagtagaattttaaagatattttgctgccattttagggttttttgcttataatcttggtatcacctctgctttatatgttgaaattatcggag |
26618203 |
T |
|
| Q |
101 |
ttatgatatttattgaagtacatcatccggacactattataagtaaaatttactttttaagttcattgaacaacttatatacatatagctaaacatatca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||||| || ||||||||||| |
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| T |
26618204 |
ttatgatatttattgaagtacaccatccggacactattataaataaaaatcactttttaagttcattgaacaacttatctacataaagttaaacatatca |
26618303 |
T |
|
| Q |
201 |
ggttcttcattgcaaagaaagtaggccaaat |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
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| T |
26618304 |
ggttcttcattgcaaaggaagtaggccaaat |
26618334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26620066 - 26620277
Alignment:
| Q |
1 |
atgcttgtagtagacttttaaagatattttgctgccattttagggttttttgcttataatcttggtatcacctctgctttacatgttgaaattatcggag |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||| |
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| T |
26620066 |
atgcttgtagtagaattttagagatattttgctgccattttagggttttttgcttataatcttggcatcacctctgctttactttttgaaattatgggag |
26620165 |
T |
|
| Q |
101 |
ttatgatatttattgaagtacatcatccggacactattataagt-aaaatttactttttaagttcattgaacaacttatatacatatagctaaacatatc |
199 |
Q |
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|
|||||||||| ||||||||||| |||||| |||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
26620166 |
ttatgatattcattgaagtacaccatccgaacactattataagtaaaaattcactttttaaattcattgaacaacttatgtacataaagctaaacatatc |
26620265 |
T |
|
| Q |
200 |
aggttcttcatt |
211 |
Q |
| |
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||| |||||||| |
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| T |
26620266 |
aggctcttcatt |
26620277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 26607536 - 26607738
Alignment:
| Q |
9 |
agtagacttttaaagatattttgctgccattttagggttttttgcttataatcttggtatcacctctgctttacatgttgaaattatcggagttatgata |
108 |
Q |
| |
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|||||| ||||||||||||||| |||||| || || |||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
26607536 |
agtagaattttaaagatatttttctgccacttagggtttttttgcttataatcttggcatcacctctactttacttgttgaaattatgggagttatgata |
26607635 |
T |
|
| Q |
109 |
tttattgaagtacatcatccggacactattataagtaaaatttactttttaagttcattgaacaacttatatacatatagctaaacatatcaggttcttc |
208 |
Q |
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|
|| ||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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|
| T |
26607636 |
ttcattgaagtacaccatctggacactattataagtaaaacttcatttttaagttcattgaacaacttatgtacataaagctaaacatattaggttcttc |
26607735 |
T |
|
| Q |
209 |
att |
211 |
Q |
| |
|
||| |
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|
| T |
26607736 |
att |
26607738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 22332422 - 22332390
Alignment:
| Q |
138 |
tataagtaaaatttactttttaagttcattgaa |
170 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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|
| T |
22332422 |
tataagtaaaatttacattttaagttcattgaa |
22332390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 68024 - 67995
Alignment:
| Q |
138 |
tataagtaaaatttactttttaagttcatt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
68024 |
tataagtaaaatttactttttaagttcatt |
67995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 38245707 - 38245678
Alignment:
| Q |
138 |
tataagtaaaatttactttttaagttcatt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38245707 |
tataagtaaaatttactttttaagttcatt |
38245678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 42761358 - 42761329
Alignment:
| Q |
138 |
tataagtaaaatttactttttaagttcatt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
42761358 |
tataagtaaaatttactttttaagttcatt |
42761329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 36916578 - 36916610
Alignment:
| Q |
119 |
tacatcatccggacactattataagtaaaattt |
151 |
Q |
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|
|||||||||||| |||||||||||||||||||| |
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| T |
36916578 |
tacatcatccggtcactattataagtaaaattt |
36916610 |
T |
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