View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_5 (Length: 457)
Name: NF19123_high_5
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 68 - 440
Target Start/End: Complemental strand, 1715354 - 1714979
Alignment:
| Q |
68 |
gttgcaattaatttgattgacccgataagaa-caattaggtaatgccacggggataagcagtttcgttagtcttgaaggaggaaaataaagtggtagaga |
166 |
Q |
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| T |
1715354 |
gttgcaattaatttgattgacccgataagaaacaattaggtaatgccacggggataagcagtttcgttggtcttgaaggaggaaaataaagtggtagaga |
1715255 |
T |
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| Q |
167 |
tggcactgaagaagtaatatataactaagcattgaacatactaaattttcatttacaactgagtgttttatattcttctagtttttccttcaagataatt |
266 |
Q |
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| T |
1715254 |
tggcactgaagaagtaatatataactaagcactgaacatactaaattttcatttacaactgagtgttttatattcttctagtttttccttcaagataatt |
1715155 |
T |
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| Q |
267 |
gaaaaagtaaaggtgagaaatgctgtaattagtagaacttgtagtgcataatgaaccacatgcttcacccaagtttgaaatcctcaaaccataa--ggag |
364 |
Q |
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||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1715154 |
gaaaaagtaaaagtgagaaatgctaggatcagtagaacttgtagtgcataatgaaccacatgcttcacccaagtttgaaatcctcaaaccataaggggag |
1715055 |
T |
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| Q |
365 |
cagggttgtggcattactgactggaatccgactgcattggctggactggtggagctgtacctactgccagcttcat |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
1715054 |
cagggttgtggcattactgactggaatccgactgcattgtctggactggtggagctgtaactactgccagcttcat |
1714979 |
T |
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