View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_high_6 (Length: 444)
Name: NF19123_high_6
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 200 - 428
Target Start/End: Original strand, 7094027 - 7094249
Alignment:
| Q |
200 |
atcttgaggcaaggcaacttatgtgtttggatcatctattgattactcattaaatcttgattgttagattaatttaatagcttggagtactatatctttt |
299 |
Q |
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| T |
7094027 |
atcttgaggcaaggcaacttatgtgtttggatcatcttcggattactcattaaatcttgattgttagattaatttaataggttggagtactatatcttt- |
7094125 |
T |
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| Q |
300 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
399 |
Q |
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| T |
7094126 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
7094225 |
T |
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| Q |
400 |
ttatgtaatgtaacttcgagcgatatttt |
428 |
Q |
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| T |
7094226 |
tt-----atgtaacttcgagcgatatttt |
7094249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 7093910 - 7093987
Alignment:
| Q |
83 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
160 |
Q |
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| T |
7093910 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
7093987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 25252499 - 25252436
Alignment:
| Q |
83 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacaca |
146 |
Q |
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| T |
25252499 |
cgaaacaaggacatgatagaaaccaatgttgagccgtctctaagcctccgcaaccagtcacaca |
25252436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 23810964 - 23811011
Alignment:
| Q |
84 |
gaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctcc |
131 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
23810964 |
gaaacaaggacaggagagaaacaaatggtgagccgtctctaagcctcc |
23811011 |
T |
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