View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_10 (Length: 372)
Name: NF19123_low_10
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 29457040 - 29456697
Alignment:
| Q |
17 |
aaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttctttaaaatggaagttgagattaatt |
116 |
Q |
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| T |
29457040 |
aaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttctttaaaatggaagttgagattaatt |
29456941 |
T |
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| Q |
117 |
ctttnnnnnnngtcttacctgtgcttcttgaaagcacctctgacacctcaccttgccaannnnnnnnctctttcaaatgagaaatatatgatgggtttgt |
216 |
Q |
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| T |
29456940 |
ctttaaaaatggtcttacctgtgcttcttgaaagcacctctgacacctcaccttgccaattttt----tttttcaaatgagaaatatatgatgggttcgt |
29456845 |
T |
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| Q |
217 |
aataacctatggaaatcccttttaaatgtttaaccaaattataaataactagcattatgttttcaaatcataaatacaaagtgccatagtaagcc----- |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29456844 |
aataacctatggaaat-ccttttaaatgtttaaccaaattataaataactagcattatgttttcaaatcataaatacaaagtgccatagtaagcctatta |
29456746 |
T |
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| Q |
312 |
atttgtttaaaaaccccttacnnnnnnngaagttaaaaaaccatgttca |
360 |
Q |
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| T |
29456745 |
atttgtttaaaaaccccttacaaaaaaagaagttaaaaaaccatgttca |
29456697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 29449028 - 29448816
Alignment:
| Q |
78 |
agtacctttgcttctttaaaatggaagttgagattaattctttnnnnnnngtcttacctgtgcttcttgaaagcacctctgacacctcaccttgccaann |
177 |
Q |
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| T |
29449028 |
agtacctttgcttctttaaaatggaagttgagattaattcttttaaaaaggtcttacatttgcttcttgaaagcacctctgacacctcaccttgcgaaaa |
29448929 |
T |
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| Q |
178 |
nnnnnnctctttcaaatgagaaatatatgatgggtttgtaataacctatggaaatcccttttaaatgtttaaccaaattataaataactagcattatgtt |
277 |
Q |
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| | ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||| |||||| | |
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| T |
29448928 |
ttgt-----tctgaaatgagaaatatatgacgggtttgtaataacctatggaaatacctgttaaatgtttagccaaattataagtaactagaattatg-t |
29448835 |
T |
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| Q |
278 |
ttcaaatcataaatacaaa |
296 |
Q |
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| T |
29448834 |
ttcaaatcataaatacaaa |
29448816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 29449118 - 29449062
Alignment:
| Q |
17 |
aaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
73 |
Q |
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|||||||| |||||||||||||||| | ||||||||||||||||| |||||| |||| |
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| T |
29449118 |
aaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
29449062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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