View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19123_low_12 (Length: 350)
Name: NF19123_low_12
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 23700801 - 23701132
Alignment:
| Q |
1 |
caagttccatggccattagatcttccctccctcgctccccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23700801 |
caagttccatggccattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattg |
23700900 |
T |
|
| Q |
101 |
tgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23700901 |
tgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataa |
23701000 |
T |
|
| Q |
201 |
aatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23701001 |
aatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaacaatcatgaggctccaaaa |
23701100 |
T |
|
| Q |
301 |
tatcattgcattttggatcaggacattttacc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23701101 |
tatcattgcattttggatcaggacattttacc |
23701132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 23695000 - 23694669
Alignment:
| Q |
1 |
caagttccatggccattagatcttccctccctcgctccccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23695000 |
caagttccatggccattagatcttccctccctcgctcaccatctttcaagcttagaaactctttacaatcaacacctatgtgccatgaaaccttacattg |
23694901 |
T |
|
| Q |
101 |
tgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23694900 |
tgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataa |
23694801 |
T |
|
| Q |
201 |
aatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23694800 |
aatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaactacaatcatgaggctccaaaa |
23694701 |
T |
|
| Q |
301 |
tatcattgcattttggatcaggacattttacc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23694700 |
tatcattgcattttggatcaggacattttacc |
23694669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 23697131 - 23696793
Alignment:
| Q |
1 |
caagttccatggccattagatcttccctccctcgctccccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||| || ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
23697131 |
caagttccatggccattagatctttcctccctcgctcgccatcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattg |
23697032 |
T |
|
| Q |
101 |
tgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataa |
200 |
Q |
| |
|
|||||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
23697031 |
tgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtac |
23696932 |
T |
|
| Q |
201 |
aatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaa |
300 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || | ||||||| |||||||||||| | |
|
|
| T |
23696931 |
aatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaattatgaggctccaata |
23696832 |
T |
|
| Q |
301 |
tatcattgcattttggatcaggacattttacctttgcta |
339 |
Q |
| |
|
|| ||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
23696831 |
taccattgcaatttggataaggacattttaccattgcta |
23696793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 330
Target Start/End: Original strand, 8148995 - 8149270
Alignment:
| Q |
52 |
tttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcc |
151 |
Q |
| |
|
|||||||| || ||||||| || | |||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | |
|
|
| T |
8148995 |
tttgaaactctctacaatcgacttccgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttc |
8149094 |
T |
|
| Q |
152 |
cttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatcta |
251 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||| || |||| | | ||| ||||||| | ||||||| |
|
|
| T |
8149095 |
atttccatcattcaccaacatagctgaacaatccttaaaaggacaataaattttctttgatccgaacatcgaa---tcaactagtgcatctccccatctt |
8149191 |
T |
|
| Q |
252 |
tcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacatttta |
330 |
Q |
| |
|
|| ||||||||||||| || ||||||| |||| | |||| || ||| || |||||| ||||||||||||||||||| |
|
|
| T |
8149192 |
tcgaacacatcctttggtataattgaaatacattgttgagtgtcaaaattactattgcaatttggatcaggacatttta |
8149270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University