View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_14 (Length: 336)
Name: NF19123_low_14
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 7554070 - 7553750
Alignment:
| Q |
19 |
attcgtttttggacaaaactttaacctatatactttttgttgctgcaactaagagtttatttatccattttactatctgcaagagagttttctgtttttg |
118 |
Q |
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| T |
7554070 |
attcgtttttggacaaaactttaacctatatactttttgttgctgcaactaggagtttatttatccattttattatctgcaagagagttttctgtttttg |
7553971 |
T |
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| Q |
119 |
gtagtgtgcatgtgatttgaaatcccaaattgtattagctaattgaattgaccactagattttgtagatatttttgaggataaatatcat---atagtga |
215 |
Q |
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| T |
7553970 |
gtagtgtgcatgtgatttgaaatcccaaattgtattagctaattgaattgaccactagattttgtagatatttttgaggataaatatcatataatagtga |
7553871 |
T |
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| Q |
216 |
gtaattaattttgtttttgacaagtagtgagtaattaattattcacgtnnnnnnnnnnnnnnnnnntttaaaccacttactttggataatatcaatttag |
315 |
Q |
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| T |
7553870 |
gtaattaattttgtttttgacaagtagtgagtaattaattattcacgtaaaaaatcaaaatcaaaatttaaaccacttactttggataatatcaatttag |
7553771 |
T |
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| Q |
316 |
acttctcatttttactacctt |
336 |
Q |
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| T |
7553770 |
acttctcatttttactacctt |
7553750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 8047572 - 8047618
Alignment:
| Q |
71 |
gagtttatttatccattttactatctgcaagagagttttctgttttt |
117 |
Q |
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| T |
8047572 |
gagtttatttatccattttattatatgcaagagagttttctgttttt |
8047618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 48250023 - 48250053
Alignment:
| Q |
117 |
tggtagtgtgcatgtgatttgaaatcccaaa |
147 |
Q |
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| T |
48250023 |
tggtagtgtgcatgtgatttgaaatcccaaa |
48250053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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