View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_18 (Length: 296)
Name: NF19123_low_18
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 23700834 - 23700577
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgta |
119 |
Q |
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| T |
23700834 |
cgagggatggaagatctaatggccatggaacttgcaaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgta |
23700735 |
T |
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| Q |
120 |
ctcgcatttcatgcaggtatattcaattctcttttgttaaaaattctacttttctttattattctgccttgtaatcaaacttatatgcaggtgtggcaat |
219 |
Q |
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| T |
23700734 |
ctcgcatttcatgcaggtatattcaattctcttttgttaaaaattctacttttatttattattctgccttgtaatcaaacttatatgcaggtgtggcaat |
23700635 |
T |
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| Q |
220 |
caattttgctatggctgtggttctccttggaataatcagtcccattatgcatgtccaa |
277 |
Q |
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| T |
23700634 |
caattttgctatggctgtggttctccttggaataatcagtcccattatgcatgtccaa |
23700577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 23697098 - 23697250
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgta |
119 |
Q |
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| T |
23697098 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgagggatgta |
23697197 |
T |
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| Q |
120 |
ctcgcatttcatgcaggtatattcaattctcttttgttaaaaattctactttt |
172 |
Q |
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| T |
23697198 |
ctcgcatttcatgcaggtatagacaattctcttttgttaagaattctactttt |
23697250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 23694967 - 23695061
Alignment:
| Q |
20 |
cgagggaggaaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtggg |
114 |
Q |
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| T |
23694967 |
cgagggagggaagatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtggg |
23695061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 23697334 - 23697395
Alignment:
| Q |
206 |
gcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattat |
267 |
Q |
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| T |
23697334 |
gcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattat |
23697395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 8148963 - 8148820
Alignment:
| Q |
31 |
agatctaatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgtactcgcatttca |
130 |
Q |
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| T |
8148963 |
agatctaatggctctggaacttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgtggaaaaaaaaggtggatgtaatcacattaga |
8148864 |
T |
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| Q |
131 |
tgcaggtatattca--attctcttttgttaaaaattctactttt |
172 |
Q |
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| T |
8148863 |
tgcaggtatagacaatattttcttatgttaagaattctactttt |
8148820 |
T |
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