View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_21 (Length: 263)
Name: NF19123_low_21
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 31567541 - 31567426
Alignment:
| Q |
18 |
atagaatcgtgcggaggaaatggggcaatgacacgacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctggaaga |
117 |
Q |
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| T |
31567541 |
atagaatcgtgcggaggaaatggggcaatgacacaacttagtcttcatgtatcctcgatacagataaaatgtgtccttaatgaaaggctgctctagaaga |
31567442 |
T |
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| Q |
118 |
gaaagctctcctaacc |
133 |
Q |
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|||||||||||||||| |
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| T |
31567441 |
gaaagctctcctaacc |
31567426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 33292846 - 33293000
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
190 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33292846 |
tccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattcttccctcaacaattttctctcttatgttctcgggtttcaaagcaa |
33292945 |
T |
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| Q |
191 |
ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaat |
245 |
Q |
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| T |
33292946 |
ggtcttctctttgcatcttaagttctttttccttcgcgacaatggttttgagaat |
33293000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 33414393 - 33414547
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
190 |
Q |
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| T |
33414393 |
tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaattttctctctaatgttctcgggttttgaagcaa |
33414492 |
T |
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| Q |
191 |
ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaat |
245 |
Q |
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| T |
33414493 |
ggtcttctctttgcatctcaagttctttttccttcgtcacaatagtttcgggaat |
33414547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 33269365 - 33269520
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctca-acaattttctctcttatgttctcgggtttcgaagca |
189 |
Q |
| |
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|||||||| ||||||| |||| |||||| ||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
33269365 |
tccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctcagacaattttctctctaatgttctcgggtttcaaagca |
33269464 |
T |
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| Q |
190 |
aggtcttctctctgcatctcaagctccttttctttcgtcacaatggttttgggaat |
245 |
Q |
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| T |
33269465 |
aggtcttctctttgcatctcaagatctttttccttcgtcacaatagtttcgggaat |
33269520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 33383850 - 33383997
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
190 |
Q |
| |
|
||||||||||||||||||| | ||||| || ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
33383850 |
tccttaatgaaaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaattttctctgttatgttctcgggtttcaaagcaa |
33383949 |
T |
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| Q |
191 |
ggtcttctctctgcatctcaagctccttttctttcgtcacaatggttt |
238 |
Q |
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| T |
33383950 |
ggtcttctctctgcaactcaagttctttttccttcgtcacaatggttt |
33383997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 31565228 - 31565113
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
190 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||| ||| ||||||| |
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| T |
31565228 |
tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttctcggcttttgaagcaa |
31565129 |
T |
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| Q |
191 |
ggtcttctctctgcat |
206 |
Q |
| |
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|||||||||||||||| |
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| T |
31565128 |
ggtcttctctctgcat |
31565113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 33394934 - 33395024
Alignment:
| Q |
148 |
ccctcaacaattttctctcttatgttctcgggtttcgaagcaaggtcttctctctgcatctcaagctccttttctttcgtcacaatggttt |
238 |
Q |
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|||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||| || || ||||| |||||| ||||||||| |
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| T |
33394934 |
ccctcaactattttctctcttatgttcccgggtttcaaagcaaggtcttctctctacatctcgagttctttttccttcgtcgcaatggttt |
33395024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 17445813 - 17445656
Alignment:
| Q |
91 |
tccttaatgaaaggctgctctggaagagaaagctctcctaacctctttatgattcttccctcaacaattttctctcttatgttctcgggtttcgaagcaa |
190 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||| || |
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| T |
17445813 |
tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaa |
17445714 |
T |
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| Q |
191 |
ggtcttctct---ctgcatctcaagctccttttctttcgtcacaatggttttgggaat |
245 |
Q |
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||||||| || |||||||||||| || ||||| ||| |||||||||||| |||||| |
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| T |
17445713 |
ggtcttccctctgctgcatctcaagttctttttccttcttcacaatggtttcgggaat |
17445656 |
T |
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