View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_28 (Length: 232)
Name: NF19123_low_28
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 8467129 - 8466915
Alignment:
| Q |
1 |
agtggaggtggacagaatgccnnnnnnnctctgtaaacaaccctttgctaagcccacatgaacaagatct--ttaagctaaattcatctgtgtgcacata |
98 |
Q |
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| T |
8467129 |
agtggaggtggacagaatgccaaaaaaactctgtaaacaaccctttgctaagcccacatgaacaagatccagttaagctaaattcatctgtgtgcacata |
8467030 |
T |
|
| Q |
99 |
tatctggtagaatcatcaacaacatatgaaacaagaagcattaaggtaataagatggatgacagccaaagagcagcaggtaggtagattgatggtgccct |
198 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8467029 |
tatatggtagaatcatcaacaacatatgaaacaagaagcattaaggtaataagatggatgacagccaaagggcagcaggtaggtagattgatggtgccct |
8466930 |
T |
|
| Q |
199 |
tatttaagatagatg |
213 |
Q |
| |
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||||||||||||||| |
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| T |
8466929 |
tatttaagatagatg |
8466915 |
T |
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