View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_3 (Length: 573)
Name: NF19123_low_3
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 558
Target Start/End: Original strand, 12122435 - 12122976
Alignment:
| Q |
17 |
aagaagggaagagtttgagaatgttggaggggatgcgtgggtcagaatagagggaggtgtagaaagcaagttcgttggaacctcgttcgtcgccttgaag |
116 |
Q |
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| T |
12122435 |
aagaagggaagaatttgagaatgttggaggggatgcgtggatcggaatagagggaggtatagaaagcaagttcgttggaacctcgttcgtcgccttgaag |
12122534 |
T |
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| Q |
117 |
aggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagcttcacc |
216 |
Q |
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| T |
12122535 |
aggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagcttcacc |
12122634 |
T |
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| Q |
217 |
attttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaagggaag |
316 |
Q |
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| T |
12122635 |
attttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaaagctattaaacatatgaaatcaagaattatatgaaaagggaag |
12122734 |
T |
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| Q |
317 |
agaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagggacataatgaagattactttagacagaa |
416 |
Q |
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| T |
12122735 |
agaaaaaccagaaaatgataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagagacataatgaagattactttagacagaa |
12122834 |
T |
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| Q |
417 |
tccataaaaccaataacaccgaactagagggacatagattgaactgaacaatatgtaggtacaaatagtagtattttgcaaaactttgtctatgtacaaa |
516 |
Q |
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| T |
12122835 |
tccataaaaccaataacaccgaactagagagacatagattgaactgaacaatatgtaggtacaaatagtagtattttgcaaaactttgtctatgtgcaaa |
12122934 |
T |
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| Q |
517 |
tatgaatattaagtattaacacattctgatagagagcataat |
558 |
Q |
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| T |
12122935 |
tatgaatattaagtattaacacattctgatagagagcataat |
12122976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 14691949 - 14692210
Alignment:
| Q |
12 |
gtgagaagaagggaagagtttgagaatgttggaggggatgcgtgggtcagaatagagggaggtgtagaaagcaagttcgttggaacctcgttcgtcgcct |
111 |
Q |
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|||| |||||||||||| |||||||||||||| ||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||| || |
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| T |
14691949 |
gtgaaaagaagggaagaatttgagaatgttggtgggaatgcgtggatcggaatagagggatgtgtagaaagcaagttcattggaacctcgttcatcgtct |
14692048 |
T |
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| Q |
112 |
tgaagaggtttgtagaattttccagaatcgtctatcagtggacctaggattccagtttttgcttggtgaccggcaacttgatgctccgggattttcagct |
211 |
Q |
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||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
14692049 |
tgaagaggtttgtagaactttccagaatcgtctattagaggacctaggattccgttttttgcttggtgacctgcaacttggtgctctgggattttcagct |
14692148 |
T |
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| Q |
212 |
tcaccattttgctactgaagctgtatctattgaacacaaataacaataaaaattgtcaaaaa |
273 |
Q |
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| T |
14692149 |
tcaccattttgttactgaagctgtatccattgaacacaaataacaacaaaaattgtcaaaaa |
14692210 |
T |
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Back To:
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