View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19123_low_4 (Length: 523)
Name: NF19123_low_4
Description: NF19123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19123_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Original strand, 54847660 - 54848188
Alignment:
| Q |
6 |
agaagcaaagggaggctcattgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgata |
102 |
Q |
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| T |
54847660 |
agaaacaaagggaggctcattgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgata |
54847759 |
T |
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| Q |
103 |
acatacaactcttttacc----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctc |
186 |
Q |
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| T |
54847760 |
acatacaactcttttacctataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctc |
54847858 |
T |
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| Q |
187 |
tcataccataattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaac |
286 |
Q |
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| T |
54847859 |
tcataccataattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacatttt-taac |
54847957 |
T |
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| Q |
287 |
aattgtattttataatttttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaa |
386 |
Q |
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| T |
54847958 |
aattgtattttataatttttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaa |
54848057 |
T |
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| Q |
387 |
agtaagagcatttaattgtttgt------------ttaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaagg |
474 |
Q |
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| T |
54848058 |
agtaagagcatttaattgtttgtttaattaattaattaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggattatcaagg |
54848157 |
T |
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| Q |
475 |
tattactcagggaaagcaagatcatttgttt |
505 |
Q |
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| T |
54848158 |
tattactcagggaaagcaagatcatttgttt |
54848188 |
T |
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