View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_high_11 (Length: 248)
Name: NF19124_high_11
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 12048917 - 12049048
Alignment:
| Q |
6 |
ggtgatgacggtggtgctatggtagcgcgacgaggacgatggcggatgagtgttaatttgcggtaacttgattgttgggtttgtgacgtttcttgttctc |
105 |
Q |
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| T |
12048917 |
ggtgatgacggtggtgccatggtagcgcgacgaggacgatggcggatgagtgttaatttgcggtgacttgatagctgggtttgtgacgtttcttgttctc |
12049016 |
T |
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| Q |
106 |
ttccactgtttctaattttccgaaagaagtga |
137 |
Q |
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| T |
12049017 |
ttccactgtttataattttctgaaagaagtga |
12049048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 12049096 - 12049149
Alignment:
| Q |
183 |
gaatgggtaaaaaagatggggatattttgttatgaattgagttcatggtgattt |
236 |
Q |
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| T |
12049096 |
gaatgggtagaaaagatggggatattttgttatgaattgagttcatggtgattt |
12049149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 20897101 - 20897045
Alignment:
| Q |
81 |
tgggtttgtgacgtttcttgttctcttccactgtttctaattttccgaaagaagtga |
137 |
Q |
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| T |
20897101 |
tgggtttgtgacgtttcttgttctctttcattgtctctaatttttcgaaagaagtga |
20897045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 46106190 - 46106059
Alignment:
| Q |
6 |
ggtgatgacggtggtgctatggtagcgcgacgaggacgatggcggatgagtgttaatttgcggtaacttgattgttgggtttgtgacgtttcttgttctc |
105 |
Q |
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| T |
46106190 |
ggtgatgacggtggtgccatggtagcgcgacgaggacgatggcggatgggtgttaatttgcggtgacttgatagctgggtttgtgatgtttcttgttctc |
46106091 |
T |
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| Q |
106 |
ttccactgtttctaattttccgaaagaagtga |
137 |
Q |
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| T |
46106090 |
ttccactgtttctaattttccgaaagaagtga |
46106059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 46106013 - 46105959
Alignment:
| Q |
182 |
agaatgggtaaaaaagatggggatattttgttatgaattgagttcatggtgattt |
236 |
Q |
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| T |
46106013 |
agaatggttagaaaagatggggatattttgttatgaattgagttcatggtgattt |
46105959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 48033767 - 48033809
Alignment:
| Q |
27 |
gtagcgcgacgaggacgatggcggatgagtgttaatttgcggt |
69 |
Q |
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| T |
48033767 |
gtagcgcgacgaggacggtggcggaggagttttaatttgcggt |
48033809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 26864722 - 26864666
Alignment:
| Q |
81 |
tgggtttgtgacgtttcttgttctcttccactgtttctaattttccgaaagaagtga |
137 |
Q |
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| T |
26864722 |
tgggtttgtgacgtttcttgttctctttcattgtttctaatttttcgaaagaagtga |
26864666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 48333540 - 48333464
Alignment:
| Q |
3 |
ggcggtgatgacggtggtgct-atggtagcgcgacgaggacgatggcggatgagtg-ttaatttgcggtaacttgat |
77 |
Q |
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| T |
48333540 |
ggcggtgatgacggtggtgcacatggtagcgcgatgaggtcaatggcggataagtgtttaagttgcggtgacttgat |
48333464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20723320 - 20723271
Alignment:
| Q |
1 |
ccggcggtgatgacggtggtgc-tatggtagcgcgacgaggacgatggcg |
49 |
Q |
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| T |
20723320 |
ccggcggtgatgacggtggtgcacatcgtagcgcgacgaggtcgatggcg |
20723271 |
T |
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