View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19124_high_17 (Length: 208)
Name: NF19124_high_17
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 48368006 - 48367826
Alignment:
| Q |
14 |
cacagaggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48368006 |
cacaaaggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcgtaagttgccaattcaggtggaat |
48367907 |
T |
|
| Q |
114 |
ttttgggttaacatttgcagcaatccacccttcagaagctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48367906 |
ttttgggttaacatttgcagcaatccacccttcagaagctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
48367826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 18045487 - 18045603
Alignment:
| Q |
39 |
aagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatc |
138 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||||| |||| ||| ||||||||||||||||| || |
|
|
| T |
18045487 |
aagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacggcataagttgcaaattcagggggaagtttagggttaacatttgcagctatg |
18045586 |
T |
|
| Q |
139 |
cacccttcagaagctcc |
155 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18045587 |
aacccttcagaagctcc |
18045603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 13979622 - 13979750
Alignment:
| Q |
31 |
tcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttg |
130 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| ||| ||||||||| || |||| |||||||||||| | |||| ||| ||||||| ||||| |
|
|
| T |
13979622 |
tcattcttaacctgtgtgagaggaatgaactcaaagtatccattttgaggaaacaaaacataggttgccaattcaaggggaagtttagggttaatatttg |
13979721 |
T |
|
| Q |
131 |
cagcaatccacccttcagaagctccatag |
159 |
Q |
| |
|
|||| || |||||||||||||||||||| |
|
|
| T |
13979722 |
cagctatgaacccttcagaagctccatag |
13979750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 10264844 - 10264987
Alignment:
| Q |
51 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
150 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
|
|
| T |
10264844 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10264943 |
T |
|
| Q |
151 |
gctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
194 |
Q |
| |
|
|| ||||| |||| ||| ||||||| | | | ||||||||||| |
|
|
| T |
10264944 |
gcaccatattcagaagtcaacaaaggaacctctcctgcatagtg |
10264987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 10242959 - 10243102
Alignment:
| Q |
51 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
150 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
|
|
| T |
10242959 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10243058 |
T |
|
| Q |
151 |
gctccatagtcagcagtacacaaaggtagcacccctgcatagtg |
194 |
Q |
| |
|
| ||||| |||| ||| ||||||| | | | ||||||||||| |
|
|
| T |
10243059 |
gagccatactcagaagtcaacaaaggaacctctcctgcatagtg |
10243102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 10272541 - 10272641
Alignment:
| Q |
51 |
aggaatgaactcaaagtaaccaatttgaggaagcacggcataagttgccaattcaggtggaatttttgggttaacatttgcagcaatccacccttcagaa |
150 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| || ||||||| || || ||||| | | ||| || || ||||||| ||||||||| ||||||||| |
|
|
| T |
10272541 |
aggaatgaattcaaagtaagcaatttgaggaagaacaacataagtagcaaactcaggagccactttaggattcacatttgaagcaatccaaccttcagaa |
10272640 |
T |
|
| Q |
151 |
g |
151 |
Q |
| |
|
| |
|
|
| T |
10272641 |
g |
10272641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University