View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19124_high_2 (Length: 725)

Name: NF19124_high_2
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19124_high_2
NF19124_high_2
[»] chr1 (1 HSPs)
chr1 (7-707)||(43348891-43349593)


Alignment Details
Target: chr1 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 7 - 707
Target Start/End: Complemental strand, 43349593 - 43348891
Alignment:
Q  7 tcgaagaatatgaagaagccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaa--gagtccatccc 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  43349593 tcgaacaatatgaagaagccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaacagagtccatccc 43349494  T
Q  105 agctacccaacaaacaagttgaaccatcttttctaaggactttgacaaatacaatttcaacatttataattattacttatcccaagcctataggaactaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349493 agctacccaacaaacaagttgaaccatcttttctaaggactttgacaaaaacaatttcaacatttataattattacttatcccaagcctataggaactaa 43349394  T
Q  205 taatcaattattattagcaaaagaaattattcttaatcaaagaaaaacaataccaaatacaagaaaccactgcacagatatgcataatcaattgaattat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349393 taatcaattattattagcaaaagaaattattcttaatcaaagaaaaacaataccaaatacaagaaaccactgcacagatatgcataatcaattgaattat 43349294  T
Q  305 ggcatcactcatcaattggcaatgccaaaatatttaagaacaaaacaaaagtgtgtctgtctcacaaaacaaaggtacatatatattgaacttgcatgaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349293 ggcatcactcatcaattggcaatgccaaaatatttaagaacaaaacaaaagtgtgtctgtctcacaaaacaaaggtacatatatattgaacttgcatgaa 43349194  T
Q  405 tcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaattatatataattaacaagac 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349193 tcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaattatatataattaacaagac 43349094  T
Q  505 aattttcttcttctaaaataaaagaaagcatgaataagcacgcttacccaaaagccaatagcatgatcaccaacataatgatagaattagagtattcttc 604  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43349093 aattttcttcttataaaataaaagaaaacatgaataagcactcttacccaaaagccaatagcatgatcaccaacataatgatagaattagagtattcttc 43348994  T
Q  605 ttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttcttggtttgaataagagcatt 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43348993 ttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttcttggtttgaataagagcatt 43348894  T
Q  705 gtt 707  Q
    |||    
T  43348893 gtt 43348891  T

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