View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19124_high_3 (Length: 629)

Name: NF19124_high_3
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19124_high_3
NF19124_high_3
[»] chr1 (4 HSPs)
chr1 (300-616)||(5206595-5206911)
chr1 (63-244)||(5206358-5206537)
chr1 (489-600)||(21545461-21545572)
chr1 (406-472)||(21545553-21545623)
[»] chr7 (1 HSPs)
chr7 (505-617)||(24578430-24578542)
[»] scaffold0862 (1 HSPs)
scaffold0862 (523-603)||(3727-3809)
[»] chr3 (2 HSPs)
chr3 (559-613)||(45294807-45294861)
chr3 (383-432)||(45294657-45294706)
[»] chr5 (2 HSPs)
chr5 (383-432)||(11847770-11847819)
chr5 (559-616)||(22011839-22011896)
[»] chr4 (1 HSPs)
chr4 (501-617)||(4216384-4216499)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 300 - 616
Target Start/End: Original strand, 5206595 - 5206911
Alignment:
Q  300 aaaataccctttgtttgaattatacagctcaaatcatattttcaattatataatgtaaactgtcttaaagttcgacaattgcatgaaatgattttatgta 399  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||    
T  5206595 aaaataccctttgtttgaattatacaactcaaatcatattttcaattatataatataaactgttttaaagttcgacaattgcatgaaatgattttgtata 5206694  T
Q  400 ttcattgattcaacaaattttcattatataaaataaaaaacaacgaccttaaaattatatcaaaatatcattacacgtacattcatatcattatatcaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  5206695 ttcattgattcaacaaattttcattatataaaataaaaaacaacgaccttaaaattatatcaaaatatcattacacgcacatccatatcattatatcaaa 5206794  T
Q  500 caatcattatatagtttttagtgatatacatttcaaacaatcctcctcgaggtccatgttacaatcatcaagtacgagactttcatctttttcaatcttg 599  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  5206795 caatcattatatagtttttggtgatatacatttcaaacaatcctcctcgaggtctatgctacaatcatcaagtacgagactttcatctttttcaatcttg 5206894  T
Q  600 acttcatcttcaacctt 616  Q
    |||||||||||||||||    
T  5206895 acttcatcttcaacctt 5206911  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 5206358 - 5206537
Alignment:
Q  63 aaggatgttcctaactaaacttaaataaagtcttaggcctataatgtgataatgtgatattgggttgtgggtttgtcaacgaaaactcaagtgaggtcga 162  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  5206358 aaggatgttcctaactaaacttaaataaggtcttaggcctataatgtgataatgtgatattgggttg--ggtttgtcaacgaaaactcaagtgaggtcga 5206455  T
Q  163 ccttttctggttattcaattttaaaagtattaaattaaaagtgttagagtccctgtctctccatgcaataaaacttaggcta 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5206456 ccttttctggttattcaattttaaaagtattaaattaaaagtgttagaatccctgtctctccatgcaataaaacttaggcta 5206537  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 600
Target Start/End: Complemental strand, 21545572 - 21545461
Alignment:
Q  489 attatatcaaacaatcattatatagtttttagtgatatacatttcaaacaatcctcctcgaggtccatgttacaatcatcaagtacgagactttcatctt 588  Q
    |||||||||||  |||||||| ||||| ||| |||||||||||||||  ||||| | || ||||| ||  ||||||||| |||| | |||||||||||||    
T  21545572 attatatcaaaatatcattatgtagttgttaatgatatacatttcaactaatccgcttcaaggtctatactacaatcataaagtccaagactttcatctt 21545473  T
Q  589 tttcaatcttga 600  Q
     || ||||||||    
T  21545472 cttaaatcttga 21545461  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 21545623 - 21545553
Alignment:
Q  406 gattcaacaaattttcattatataaa----ataaaaaacaacgaccttaaaattatatcaaaatatcatta 472  Q
    ||||||||||||||||||| ||||||    |||||| ||||||| |||| |||||||||||||||||||||    
T  21545623 gattcaacaaattttcattgtataaataatataaaagacaacgagcttataattatatcaaaatatcatta 21545553  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 505 - 617
Target Start/End: Original strand, 24578430 - 24578542
Alignment:
Q  505 attatatagtttttagtgatatacatttcaaacaatcctcctcgaggtccatgttacaatcatcaagtacgagactttcatctttttcaatcttgacttc 604  Q
    ||||||||||| ||| |||||||||||||||  |||   ||   ||||| ||| |||||||||||||| | ||  ||||||||||||||||||||||| |    
T  24578430 attatatagttgttaatgatatacatttcaactaatttgcccaaaggtctatgctacaatcatcaagtccaaggttttcatctttttcaatcttgactcc 24578529  T
Q  605 atcttcaaccttc 617  Q
    |||| ||||||||    
T  24578530 atctccaaccttc 24578542  T

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Target: scaffold0862 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 3809 - 3727
Alignment:
Q  523 atatacatttcaaacaatcctcctcgaggtccatgttacaatcatcaagtacgagactttcatc--tttttcaatcttgactt 603  Q
    |||||||||||||  ||||| |  | ||||| |||||||||||||||| | | |||||||||||  |||||||||||||||||    
T  3809 atatacatttcaactaatccgctccaaggtctatgttacaatcatcaaatccaagactttcatccttttttcaatcttgactt 3727  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 613
Target Start/End: Original strand, 45294807 - 45294861
Alignment:
Q  559 tacaatcatcaagtacgagactttcatctttttcaatcttgacttcatcttcaac 613  Q
    |||||||||||||| | || |||||||| | ||||||||||||| ||||||||||    
T  45294807 tacaatcatcaagttccaggctttcatcctattcaatcttgactccatcttcaac 45294861  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 45294657 - 45294706
Alignment:
Q  383 tgaaatgattttatgtattcattgattcaacaaattttcattatataaaa 432  Q
    ||||||||||| |||| ||  | |||||||||||||||||||||||||||    
T  45294657 tgaaatgatttcatgtctttgtggattcaacaaattttcattatataaaa 45294706  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 11847770 - 11847819
Alignment:
Q  383 tgaaatgattttatgtattcattgattcaacaaattttcattatataaaa 432  Q
    |||||||||||||| | ||  ||| |||||||||||||||||||||||||    
T  11847770 tgaaatgattttatatctttgttgcttcaacaaattttcattatataaaa 11847819  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 616
Target Start/End: Complemental strand, 22011896 - 22011839
Alignment:
Q  559 tacaatcatcaagtacgagactttcatctttttcaatcttgacttcatcttcaacctt 616  Q
    |||||||| ||||| | || |||| ||| ||||||||||||||| |||||||||||||    
T  22011896 tacaatcaacaagtccaaggcttttatccttttcaatcttgactccatcttcaacctt 22011839  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 617
Target Start/End: Complemental strand, 4216499 - 4216384
Alignment:
Q  501 aatcattatatagtttttagtgatatacatttcaaacaatcctcctcgaggtccatgttacaatcatcaagtacgagactttcatctttttcaatcttga 600  Q
    ||||||||| ||||| |||   |||||||||||||  ||||| ||  |||||  ||| |||||||||||||| | || ||||||||  ||||||||||||    
T  4216499 aatcattatgtagttgttaacaatatacatttcaactaatccaccctgaggtatatgctacaatcatcaagtccaaggctttcatc-atttcaatcttga 4216401  T
Q  601 cttcatcttcaaccttc 617  Q
    || ||| | ||||||||    
T  4216400 ctccatatccaaccttc 4216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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