View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19124_high_8 (Length: 286)
Name: NF19124_high_8
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 48367978 - 48368257
Alignment:
| Q |
1 |
gcttgagaatgaaaatactttcctttgtgttaatcctcagccagtgggactcactgaggttaaagttggtgaagagtatgaaattgttatgaccactcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48367978 |
gcttgagaatgaaaatactttcctttgtgttaatcctcagccagtgggactcactgaggttaaagttggtgaagagtatgaaattgttatgaccactcca |
48368077 |
T |
|
| Q |
101 |
acaggtaagtactcaattattgtccggttaatttacttttgtttggtacattcacattaactgatgaatgaatcagtactatgtactaccaaggaccaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48368078 |
acaggtaagtactcaattattgtccggttaatttacttttgtttggtacattcacattaactgatgaatgaatcagtactatgtactaccaaggaccaca |
48368177 |
T |
|
| Q |
201 |
actacttttttcttcattcatactgcgaatgtgatgctggcaggcacattgtgtagtactataaagaaaaccagaataat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
48368178 |
actacttttttcttcattcatactgcgaatgtgatgctggcaggcacattgtgtagtactataaagaaagccataataat |
48368257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 18045475 - 18045378
Alignment:
| Q |
16 |
tactttcctttgtgttaatcctcagccagtgggactcactgaggttaaagttggtgaagagtatgaaattgttatgaccactccaacaggtaagtact |
113 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||| || |||||| |||| |||||||||||| |||||| | || |||||||||||| |
|
|
| T |
18045475 |
tactttcctttgtgctgatcctcagccaatgggactcactgaggtgaaggttggtaaagaatatgaaattgttgtgaccaattcagcaggtaagtact |
18045378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 13979611 - 13979521
Alignment:
| Q |
23 |
ctttgtgttaatcctcagccagtgggactcactgaggttaaagttggtgaagagtatgaaattgttatgaccactccaacaggtaagtact |
113 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||| |||||| | || ||||||| |||| |
|
|
| T |
13979611 |
ctttgtgttgatcctcatccagtgggactcactgaggtgaaggttggtgaagaatatgaaattgttctgaccaattcagcaggtaaatact |
13979521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University