View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_high_9 (Length: 254)
Name: NF19124_high_9
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 6674665 - 6674806
Alignment:
| Q |
12 |
atagcgaaatttaaacatatctacatactttcaatatatttaaatctcctccatcaatgagtgtaaataccatttgaaattacactaacgaactggacca |
111 |
Q |
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| T |
6674665 |
atagcgaaatttaaacatatctacacactttcaatatatttaaatctcctccattaatgagtgtaaataccatttgaaattacactaacgtactggacca |
6674764 |
T |
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| Q |
112 |
ctcccattgtttcaccaaactcactcgaaccatttctctcta |
153 |
Q |
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| T |
6674765 |
ctcccattgtttcaccaaactcactcgcaccatttctctcta |
6674806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 6671581 - 6671714
Alignment:
| Q |
94 |
cactaacgaactggaccactcccattgtttcaccaaactcactcgaaccatttctctctacctaaaccacgaccgaatcactcactcgccgtggtggctc |
193 |
Q |
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| T |
6671581 |
cactaatgtactggacaacccccattgtttcaacaaactcacttgcaccatttctctctgcctaaaccacggccaaatcattcactcgccgtgctggctt |
6671680 |
T |
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| Q |
194 |
acaaactgatacaaatggattcctcctcctatga |
227 |
Q |
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| T |
6671681 |
acaaactgatacaaaaggattcctcgtcctatga |
6671714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 36855093 - 36855015
Alignment:
| Q |
142 |
catttctctctaccta-aaccacgaccgaatcactcactcgccgtggtggctcacaaactgatacaaatggattcctcc |
219 |
Q |
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| T |
36855093 |
catttctctctacccccaaccacgaccgagtcattcactctctgtcgtagctcacaaactgatataaatgggttcctcc |
36855015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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