View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_1 (Length: 750)
Name: NF19124_low_1
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 146 - 732
Target Start/End: Original strand, 3723485 - 3724071
Alignment:
| Q |
146 |
ataaaaaatatatttcaatgaaaaataatagggaagaaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
245 |
Q |
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|||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723485 |
ataataaatatatttcaatgaaaaataacagggaagtaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
3723584 |
T |
|
| Q |
246 |
attccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctagcaccacaaagaattgtgaatttaatcaaccaatag |
345 |
Q |
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| T |
3723585 |
actccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctaacaccacaaagaattgtgaatttaatcaaccaatag |
3723684 |
T |
|
| Q |
346 |
gagttcatcatcgaccttgccaataattatttaaagatcatttaaatnnnnnnntagatatataaatcaacttcacatcagaatgagagaatatcaacta |
445 |
Q |
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| T |
3723685 |
gagttcatcatcgaccttgccaataattatttaaagatcatttaaataaaaaattagatatataaaccaacttcacatcagaatgagagaatatcaacta |
3723784 |
T |
|
| Q |
446 |
tcaattatcagtttaaaataatttgatgataaggtcacaaacaaagttttgatgagcaaatcacatgtgaacttaactgcaacaaaataatcataaatat |
545 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723785 |
tcaattatcagtttgaaataatttgatgataaggtcacaaacaaagttttgatgagcaaatcacatgtgaacttaactgcaacaaaataatcataaatat |
3723884 |
T |
|
| Q |
546 |
gtaattatgctaaaaaagacagtgaatatcaggggacattgaatctaacctgtgacctataacaaaatttatgattatgcccttttcttcctgcaacttc |
645 |
Q |
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| T |
3723885 |
gtaattatgctaaaaaagacagtgaatatcaggggacattgaatataacctgcgacctataacaaaacgtatgattatgcccttttcttcctccaacttc |
3723984 |
T |
|
| Q |
646 |
tttctatcctcagctgatggattatttatttcaaaccacgggtcagatgtattaggtacatagaatcaaaaagtgaagagaaaaaac |
732 |
Q |
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| T |
3723985 |
tttctatcctcagctgatggattatttatttcaaaccacgggtcagatgcattaggtacatagaatcaaaaagtgaagagaaaaaac |
3724071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 3723315 - 3723459
Alignment:
| Q |
9 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723315 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
3723414 |
T |
|
| Q |
109 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
153 |
Q |
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| T |
3723415 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
3723459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 37186402 - 37186505
Alignment:
| Q |
9 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
108 |
Q |
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||||||||||||||||||| ||| || || |||||||||||| |||| |||| | ||||||||| || ||||| ||||||| ||| | |||||||| | |
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| T |
37186402 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgataattcaaggtatccttcaa |
37186501 |
T |
|
| Q |
109 |
catg |
112 |
Q |
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|||| |
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|
| T |
37186502 |
catg |
37186505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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