View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_12 (Length: 251)
Name: NF19124_low_12
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 44914252 - 44914037
Alignment:
| Q |
10 |
attatactaaccattacatcgccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgaggcttgatttac |
109 |
Q |
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| T |
44914252 |
attatactaaccattacatcaccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgaggcttgatttac |
44914153 |
T |
|
| Q |
110 |
tcacagcaggagaacatcttcgataatcacgaacctgaagtgttacagaattgatcaaagatcaaccatttagatagaaatttaaatgttgcctttaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44914152 |
tcacagcaggagaacatcttcgataatcacgaacctgaagtgttacagaattgatcaaagctcaaccatttagatagaaatttaaatgttgcctttaaaa |
44914053 |
T |
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| Q |
210 |
gtaaagcatgcaaaaa |
225 |
Q |
| |
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|||||||||||||||| |
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| T |
44914052 |
gtaaagcatgcaaaaa |
44914037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 7747955 - 7747841
Alignment:
| Q |
9 |
gattatactaaccattacatcgccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgaggcttgattta |
108 |
Q |
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||||||||| ||||||| ||| ||||| |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
7747955 |
gattatactcaccattagatcaccataagtccaagacttatcagtaatagatgggatgtccttaacaatattttccaatgacatcttgaggcatacttta |
7747856 |
T |
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| Q |
109 |
ctcacagcaggagaa |
123 |
Q |
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|||||| ||||||| |
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| T |
7747855 |
ttcacagtaggagaa |
7747841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 44909410 - 44909247
Alignment:
| Q |
13 |
atactaaccattacatcgccatatttccaagacttgtcagtatgagatgggatg---tccttcacaatattttccaatgacatcttgaggcttgatttac |
109 |
Q |
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||||| ||||| | ||| |||||| |||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
44909410 |
atactcaccataatatcaccatatgtccaagacttatcactaagagatgggatgatgtccttcacaatattttccaatgacatcttaaggcatactttac |
44909311 |
T |
|
| Q |
110 |
tcacagcaggagaacatcttcgataatcacgaacctgaagtgttacagaattgatcaaagatcaacc |
176 |
Q |
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||| | | ||| |||||||||||||||| ||||| ||||||||| |||||||||||| |||||| |
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| T |
44909310 |
tca---cggtagagtatcttcgataatcacgcacctggagtgttacataattgatcaaagttcaacc |
44909247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 7747482 - 7747437
Alignment:
| Q |
180 |
tagatagaaatttaaatgttgcctttaaaagtaaagcatgcaaaaa |
225 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
7747482 |
tagattgaaatttaaatgttgcctttaaaagtaaatcatgccaaaa |
7747437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 7747801 - 7747761
Alignment:
| Q |
124 |
catcttcgataatcacgaacctgaagtgttacagaattgat |
164 |
Q |
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||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
7747801 |
catcttcgataatcacgcacctggagtattacagaattgat |
7747761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 2337334 - 2337222
Alignment:
| Q |
12 |
tatactaaccattacatcgccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgaggcttgatttactc |
111 |
Q |
| |
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|||||| ||||||| ||| || ||| |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||| || |
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| T |
2337334 |
tatactcaccattatatctccgtatgtccaagacttatcagtaaaagatgggatgtccttcacaatattttccaacgacatcttgaggcatactttattc |
2337235 |
T |
|
| Q |
112 |
acagcaggagaac |
124 |
Q |
| |
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|||| |||||||| |
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|
| T |
2337234 |
acagtaggagaac |
2337222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 2337183 - 2337130
Alignment:
| Q |
124 |
catcttcgataatcacgaacctgaagtgttacagaattgat-caaagatcaacc |
176 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||| |
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| T |
2337183 |
catcttcgataatcacgcacctggagtgttacagaattgatacaaagctcaacc |
2337130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 11998585 - 11998689
Alignment:
| Q |
20 |
ccattacatcgccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgaggcttgatttactcacagcagg |
119 |
Q |
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|||||| ||| |||||| |||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||| ||| |
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| T |
11998585 |
ccattatatcaccatatatccaagacttctcagtaagagatggtatgtccttcacaatattttccaatgatatcttgaggaatactttactcacagtagg |
11998684 |
T |
|
| Q |
120 |
agaac |
124 |
Q |
| |
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||||| |
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|
| T |
11998685 |
agaac |
11998689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 11998274 - 11998186
Alignment:
| Q |
10 |
attatactaaccattacatcgccatatttccaagacttgtcagtatgagatgggatgtccttcacaatattttccaatgacatcttgag |
98 |
Q |
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|||||||| || |||| ||| || ||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
11998274 |
attatactcacaattatatcaccgtatgtccaagacttatcagtaagagatgggatgtccttcacaatatttttcaatgacattttgag |
11998186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 11998088 - 11998040
Alignment:
| Q |
171 |
tcaaccatttagatagaaatttaaatgttgcctttaaaagtaaagcatg |
219 |
Q |
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|||||| | ||||||||||||||||||||| ||||||| ||||||||| |
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| T |
11998088 |
tcaaccttatagatagaaatttaaatgttgtatttaaaactaaagcatg |
11998040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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