View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_15 (Length: 243)
Name: NF19124_low_15
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 38082273 - 38082069
Alignment:
| Q |
20 |
caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattgttgtctcgccttttttacttgaatttatcctttgaaagaca |
119 |
Q |
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| T |
38082273 |
caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattgttgtctcgccttttttacttgaatttatcctttgaaagaca |
38082174 |
T |
|
| Q |
120 |
atattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082173 |
atattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaaca |
38082074 |
T |
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| Q |
220 |
ccgtc |
224 |
Q |
| |
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||||| |
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| T |
38082073 |
ccgtc |
38082069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 38086710 - 38086498
Alignment:
| Q |
20 |
caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattg------ttgtctcgccttttttacttgaatttat------c |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||| | |||| | | ||| ||| ||||||||||||||||||| | |
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| T |
38086710 |
caagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttacc |
38086611 |
T |
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| Q |
108 |
ctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttg |
207 |
Q |
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| T |
38086610 |
ctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttg |
38086511 |
T |
|
| Q |
208 |
gaactgtaaacac |
220 |
Q |
| |
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|||| |||||||| |
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| T |
38086510 |
gaacagtaaacac |
38086498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 38061588 - 38061775
Alignment:
| Q |
20 |
caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattgttgt------ctcgccttttttacttgaatttatcctttga |
113 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||| | | ||||| || |||||||||||| |||||| |||||| |
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| T |
38061588 |
caagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgacttaccttttttacttaaatttaccctttgc |
38061687 |
T |
|
| Q |
114 |
aagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatg |
201 |
Q |
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| T |
38061688 |
aagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgttgcattttgatccaatg |
38061775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 38058859 - 38058669
Alignment:
| Q |
27 |
atgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattgttgt------ctcgccttttttacttgaatttatcctttgaaagacaa |
120 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||| | | ||||| || || ||| |||||||||||| |||||| |||| || |
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| T |
38058859 |
atgagcttatctactcctccaagaaacaaggcttgaaatatagcttgtactgttgattttgacttcccctttatacttgaatttaccctttgtaagataa |
38058760 |
T |
|
| Q |
121 |
tattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaac |
211 |
Q |
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| | || ||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||| |||||||||| | ||||||| |
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| T |
38058759 |
cagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattgtgttccaatgtttttggaac |
38058669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 38073200 - 38072985
Alignment:
| Q |
20 |
caagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctagaattgttgtct------cgccttttttacttgaatttat------c |
107 |
Q |
| |
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|||||| | ||| |||||||||| ||| |||||||||| |||||||| |||||| | ||||| || | |||| |||||||||||||| | |
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| T |
38073200 |
caagggtaagaggttatctacacttcctagaaacaaggattgaaataaagctagtactgttgactttggctcaccttgtttacttgaatttaaatctagc |
38073101 |
T |
|
| Q |
108 |
ctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttg |
207 |
Q |
| |
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||||| |||| |||||| ||||||| |||||| |||| |||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38073100 |
ctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttg |
38073001 |
T |
|
| Q |
208 |
gaactgtaaacaccgt |
223 |
Q |
| |
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|||| ||||||||||| |
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| T |
38073000 |
gaacagtaaacaccgt |
38072985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 10793055 - 10792940
Alignment:
| Q |
89 |
ttttttacttgaatttatcctttgaaagacaatat---tgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgtt |
185 |
Q |
| |
|
||||||||||||||||| |||| | |||| || || | |||||||||||| |||||||| |||||| || | |||||| ||||||||||| |||||| |
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| T |
10793055 |
ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt |
10792956 |
T |
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| Q |
186 |
gcattttgttccaatg |
201 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
10792955 |
gcattttgatccaatg |
10792940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 34268580 - 34268695
Alignment:
| Q |
89 |
ttttttacttgaatttatcctttgaaagacaatat---tgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgtt |
185 |
Q |
| |
|
||||||||||||||||| |||| | |||| || || | |||||||||||| |||||||| |||||| || | |||||| ||||||||||| |||||| |
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| T |
34268580 |
ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt |
34268679 |
T |
|
| Q |
186 |
gcattttgttccaatg |
201 |
Q |
| |
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|||||||| ||||||| |
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|
| T |
34268680 |
gcattttgatccaatg |
34268695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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