View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_16 (Length: 237)
Name: NF19124_low_16
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_16 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 10827 - 11020
Alignment:
| Q |
26 |
atcaacataaatagcatcgcgtctattgtacaagcatcgttggataacactaaggttaatctttcatctggtatacatgtaactgtgagaattcaatatt |
125 |
Q |
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| T |
10827 |
atcaacataaatagcatcgcgtctattgtacaagcatcgttggataacactaaggttaatctttcatctggtatacatgtaactgtgagaattcaatatt |
10926 |
T |
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| Q |
126 |
tcaatgatgtgatatctgtttttgcttcaatgggtgactatttactagattctatggagaccattttggtatctccacctcttaatctatcttc |
219 |
Q |
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| T |
10927 |
tcaatgatgtgatatctgtttttgcttcaatgggtgactatttactagattctatggagaccattttggtatctccacctcttaatctatcttc |
11020 |
T |
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Target: scaffold0015; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 36537 - 36688
Alignment:
| Q |
55 |
acaagcatcgttggataacactaaggttaatctttcatctggtatacatgtaactgtgagaattcaatatttcaatgatgtgatatctgtttttgcttca |
154 |
Q |
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| T |
36537 |
acaagcatcattggaaaacactaaggtcaatctttcatctggtttagatgtaactatgagaattcaatattccaatgatataatatctgtttttggttca |
36636 |
T |
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| Q |
155 |
atgggtgactatttactagattctatggagaccattttggtatctccacctctta |
209 |
Q |
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| T |
36637 |
atgagt---aattcaaatgattctatggaaacccttttggtatctccacctctta |
36688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 19916 - 19722
Alignment:
| Q |
26 |
atcaacataaatagcatcgcgtctattgt-acaagcatcgttggataacactaaggttaatctttcatctggtatacatgtaactgtgagaattcaatat |
124 |
Q |
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| T |
19916 |
atcaacataaatagcatctcttc-attgacacaagcatcattggagaacactaaaatcaatatttcatctggtttagatgtaactgtgagaattcaatat |
19818 |
T |
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| Q |
125 |
ttcaatgatgtgatatctgt-ttttgcttcaatgggtgactatttactagattctatggagaccattttggtatctccacctcttaatctatcttc |
219 |
Q |
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| T |
19817 |
tccaatgatataatatctgttttttggttcaatgagtaaaaactcaaatgattttatggagacccttttggtatctccacctcttaatctctcttc |
19722 |
T |
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