View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_18 (Length: 237)
Name: NF19124_low_18
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32802958 - 32803179
Alignment:
| Q |
1 |
taagaccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagc |
100 |
Q |
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| T |
32802958 |
taagaccagttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagc |
32803057 |
T |
|
| Q |
101 |
tgaaggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccgcgttgacgccttcttgcgaattgtgctacactttctgct |
200 |
Q |
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| T |
32803058 |
tgaaggttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccgcgttgacgcctccttgcgaattgtgctacactttctgct |
32803157 |
T |
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| Q |
201 |
atatcagctccaccagctacct |
222 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
32803158 |
atatcagctccaccggctacct |
32803179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 16578932 - 16578727
Alignment:
| Q |
6 |
ccggttgaacctggtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaag |
105 |
Q |
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| T |
16578932 |
ccggttgcgcctggaggagcaggtcctggtagaaaagctccggttaatgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgcag |
16578833 |
T |
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| Q |
106 |
gttgtctaagagtaacattagctacagagccacttccactgagaacacaaacaccgcgttgacgccttcttgcgaattgtgctacactttctgctatatc |
205 |
Q |
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| T |
16578832 |
gttgtctaagggtaacatttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatc |
16578733 |
T |
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| Q |
206 |
agctcc |
211 |
Q |
| |
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||||| |
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| T |
16578732 |
tgctcc |
16578727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 32809558 - 32809702
Alignment:
| Q |
48 |
gttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagc-----tacagagccacttcc |
142 |
Q |
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||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32809558 |
gttaaggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagccacttcc |
32809654 |
T |
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| Q |
143 |
actgagaacacaaa-caccgcgttgacgccttcttgcgaattgtgcta |
189 |
Q |
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||| | || | ||| |||| | |||||||||||||||||||||||||| |
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| T |
32809655 |
actaaaaaaaaaaagcaccacattgacgccttcttgcgaattgtgcta |
32809702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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