View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_19 (Length: 235)
Name: NF19124_low_19
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 6721454 - 6721251
Alignment:
| Q |
12 |
aacctgtggtgagaaaacataataaggtatgtcaatacgatgcatacaagaaaaatgttgaatatttcattcaactcaaaatagaggaaaccaaaaaaca |
111 |
Q |
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| T |
6721454 |
aacctctggtgagaaaacataataaggtatgtcaatacgatgcagataagaaaaatgttaaatatttcattcaactcaaaatagaggaaaccaaaaaaca |
6721355 |
T |
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| Q |
112 |
acaattgtaacctaataatttccccannnnnnnnnnnnnnacactgctaaatttgtttgaatgacgatgtagtttggtgtaaaatgaccataaaaatgaa |
211 |
Q |
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| T |
6721354 |
acaattgtaacttaatattttcccta-tttttttcttttcacactgctaaatttgtttgaatgatgatgtagtttggtgtaaaatgaccataaaaatgaa |
6721256 |
T |
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| Q |
212 |
aactt |
216 |
Q |
| |
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||||| |
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| T |
6721255 |
aactt |
6721251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 6716687 - 6716619
Alignment:
| Q |
43 |
tcaatacgatgcatacaagaaaaatgttgaatatttcattcaactcaaaat--agaggaaaccaaaaaa |
109 |
Q |
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| T |
6716687 |
tcaatacattgcatacatgaaaaatgttaaatatttcactcaactcaaaatagagaggaaaccaaaaaa |
6716619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 6721791 - 6721754
Alignment:
| Q |
72 |
aatatttcattcaactcaaaatagaggaaaccaaaaaa |
109 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |
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| T |
6721791 |
aatatttcattcaactaaaaaaagaggaaaccaaaaaa |
6721754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 42230614 - 42230689
Alignment:
| Q |
42 |
gtcaatacgatgcatacaagaaaaatgttgaatatttcattcaactcaaaatagaggaaaccaaaaaacaacaattg |
118 |
Q |
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|||||||||||||||||| |||||||||| |||||| |||||||||||||| | |||||||||||||| |||||||| |
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| T |
42230614 |
gtcaatacgatgcatacatgaaaaatgttaaatatt-cattcaactcaaaacaaaggaaaccaaaaaataacaattg |
42230689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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