View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_2 (Length: 729)
Name: NF19124_low_2
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 9662540 - 9662176
Alignment:
| Q |
16 |
atgctagaaatttatttaatcaaacaattaaattcaagttgtctatgagttttactnnnnnnncgaattgttgaacctgatttcaatttttaggtggaat |
115 |
Q |
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| T |
9662540 |
atgctagaaatttatttaaccaaacaattaaattcaaattgtttatgagttttactaaagaa-cgaattgttgaacctgatttcaatttttaagtggaat |
9662442 |
T |
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| Q |
116 |
aattattagtcagactttacacaccttccaattaaactctagattactaaggctccctacccttaaaaactaaaaggttgac-nnnnnnnntactagaaa |
214 |
Q |
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| T |
9662441 |
aattattagtcagactttacacaccttccgattaaactctagattactaaggccccctatccttaaaaactaaaaggttaacaaaaaaaaatactagaaa |
9662342 |
T |
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| Q |
215 |
ttttagtggccatcaagtcaagg---aataaataatttgactagaagaaaatttcgtagtgtggttcatgtgattttgtcactg-------tgatgttta |
304 |
Q |
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| T |
9662341 |
ttttagtggccatcaagtcaaggattaataaataatttgactagaagaaaatttcgtagtgtggttcatgtgattttgtcactgtgagtcatgatgttta |
9662242 |
T |
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| Q |
305 |
ttcatcaattattggtgtaataattttgcaccgatacgtaaagaaccacgtttctgaaaaactaat |
370 |
Q |
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| T |
9662241 |
ttcatcaattattggtgtaataattttgcaccgatacgtaaagaaccacgtttctgaaaaactaat |
9662176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 385 - 714
Target Start/End: Complemental strand, 9661744 - 9661410
Alignment:
| Q |
385 |
tatagttcaatgaagccaatcacatgtcatccagcagtctctgttcaggtggggtaaataacaaccaatcattgtgttcttccaannnnnnnnnnnnaaa |
484 |
Q |
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| T |
9661744 |
tatagttcaatgaagccaatcacatgtcatccagcagtctctgtccaggtggggtaaataacaaccaatcattgtgttcttccaatttttaatttttaaa |
9661645 |
T |
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| Q |
485 |
attgttgttggtgaaagaagctttttgaataagttaattaatgaagtttcctgtnnnnnnn-gttaattaatgaatttaaataaacaataatttggtgta |
583 |
Q |
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| T |
9661644 |
attgttgttggtgaaagaagctttttgaataagttaattaatgaagtttcctgtaaaaaaaagttaattaacgaatttaaataaacaataacttggtgta |
9661545 |
T |
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| Q |
584 |
ttttttactctacactcaataacttggtgtatctttactacatattgttgcattttcaaatttc-aaaatatattacaatatactactactatt---tat |
679 |
Q |
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| T |
9661544 |
ttttttactctacactcaataacttggtgtatctttactacatattgttgcattttcaaatttcaaaaatatattacaatatactactactatttagtat |
9661445 |
T |
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| Q |
680 |
tttattgcttaataaaattatccttcctagaaact |
714 |
Q |
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| T |
9661444 |
ttcattgcttaataaaattatccttcctagaaact |
9661410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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