View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19124_low_20 (Length: 215)
Name: NF19124_low_20
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 4793999 - 4793894
Alignment:
| Q |
87 |
cgcacaaaaaagttgaaatttattcgatgaatttggatgtgcgtttgcataaccacttaaatcaaatcagattttggattctttttgaccatcaaagcga |
186 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4793999 |
cgcaaaaaaaagttgaaatttattcgatgaatttggatgtgcgtttgcataaccacttaaatcaaatcaaattttggattcttttttaccatcaaagcga |
4793900 |
T |
|
| Q |
187 |
acaaac |
192 |
Q |
| |
|
|||||| |
|
|
| T |
4793899 |
acaaac |
4793894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 4794043 - 4793992
Alignment:
| Q |
17 |
aatatttatagatgtacacaaactaatctaaattaatagaaaatcgcaaaaa |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4794043 |
aatatttatagatgtacacaaactaatctaaattaatagaaaatcgcaaaaa |
4793992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University