View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_5 (Length: 561)
Name: NF19124_low_5
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 39756423 - 39756956
Alignment:
| Q |
18 |
cctctgacatgaagaagagataatttattatagtcaaagatagagaaaagaaatcagtcaaatgcatgttatgttcaaaccaaccaaaccc-atacgtgt |
116 |
Q |
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| T |
39756423 |
cctctgacatgaagaagagataatttattatagtcaaagatagagaaaagaaatcagtcaaatgcatgttatgttcaaaccaaccaaaccccatacgtgt |
39756522 |
T |
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| Q |
117 |
aaaaatttaaaacgccgcttttattgttcctttgactggtcaacgatatggatataatagtacaaatatatttattgtttttatcatcatttaatgatat |
216 |
Q |
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| T |
39756523 |
aaaaatttaaaacgccgcttttattgttcctttgactggtcaacgatatggatataatagtacaaatatatttattgtttttatcatcatttaatgatat |
39756622 |
T |
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| Q |
217 |
taatgatggattggagggtcacctcaataggaatttattccatagagaatagagatagagggagggaatggaaatgatttagacacgtctattttgtttt |
316 |
Q |
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| T |
39756623 |
taatgatggattggagggtcacctcaataggaatttattccatagagaatagagatagagggagggaatggaaatgatttagacacgtctattttgtttt |
39756722 |
T |
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| Q |
317 |
tcatgtcttctagttaattcatttatcatatgaggaccgtcacgacccattcctccctattctcccatcccattctcatgtccttcatcatgcctttcat |
416 |
Q |
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| T |
39756723 |
tcatgtcttctagttaattcatttatcatatgaggac---cacgacccattc---------ctcccatcccattcttatgtccttcatcatgcctttcat |
39756810 |
T |
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| Q |
417 |
tccatgctctcactttctttctttcctac-nnnnnnnatttattcagagaataactcatttttaataatcgctaatacttatttcgtcctaaaatgtaaa |
515 |
Q |
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| T |
39756811 |
tccatgttctcactttctttctttcctacttttttttttttattcagagaataactcatttttaataatcgctaatacttatttcgtcttaaaatgtaaa |
39756910 |
T |
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| Q |
516 |
caaaaataggtcaatgtaaattgagcaatatcatgattcgtattag |
561 |
Q |
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| T |
39756911 |
caaaaatagatcaatataaattgagcaatatcataattcggattag |
39756956 |
T |
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