View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_6 (Length: 531)
Name: NF19124_low_6
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 512
Target Start/End: Original strand, 6317798 - 6318298
Alignment:
| Q |
14 |
taaataattcttggaggaaacttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaat-ctggttttggtgttgttgttccaagag |
112 |
Q |
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| T |
6317798 |
taaataattcttcgaggaaacttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaattctggttttggtgttgttgttccaagag |
6317897 |
T |
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| Q |
113 |
gaaacttgatcagtgaaatatggtcatatgatttatgtaaacttgagaaaaccaggggagtggacaaagttatggaggttaagagtaccaaaaaaggttg |
212 |
Q |
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| T |
6317898 |
gaaacttgatcagtgaaatatggtcatatgatttatgtaaacttgagaaaaccaggggagtggacaaagttatggaggttaagagtaccaaaaaaggttg |
6317997 |
T |
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| Q |
213 |
atcgcagacgagagaaaaactcataacaagaggggtacaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatatcttgttt |
312 |
Q |
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| T |
6317998 |
atcgcagacgagagaaaaactcataacaagaggggttcaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatatcttgttt |
6318097 |
T |
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| Q |
313 |
gaatgccaagaggctataaaagtttgggagtatagtgacatatgaccttaaattcaaacgtatgtaggtcagtttcatgatgtggagagaatttaatttt |
412 |
Q |
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| T |
6318098 |
gaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggtcagtttcatcatgtggagagaatttaatttt |
6318197 |
T |
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| Q |
413 |
actgtcatcaacagctgcacgtacaacaaggattatgaatggtaaactctaagaatatgcaggcaac-----aatctaacaagcttttttgaattcatct |
507 |
Q |
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| T |
6318198 |
actgtcatcaacagctgc----acaacaaggattatgaatggtaaactctaagaatatgcaggcaacaatataatctaacaagcttttttgaattcatct |
6318293 |
T |
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| Q |
508 |
gtagt |
512 |
Q |
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| T |
6318294 |
gtagt |
6318298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 6299943 - 6299993
Alignment:
| Q |
54 |
agaactgagttgattaatgagtgaagctaaatctggttttggtgttgttgt |
104 |
Q |
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| T |
6299943 |
agaactgagttgatcaacaagagaagctaaatctggttttggtgttgttgt |
6299993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 455
Target Start/End: Original strand, 6314954 - 6315104
Alignment:
| Q |
301 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgacatatgaccttaaattcaaacgtatgta--ggtcagtttcatgatgtgga |
398 |
Q |
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| T |
6314954 |
catatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtg-- |
6315051 |
T |
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| Q |
399 |
gagaatttaattttactgtcatcaacagctgcacgtacaacaaggattatgaatggt |
455 |
Q |
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| T |
6315052 |
cagaatttatttttactgtcatcaacaactgc----acaacaatgattatgaatggt |
6315104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 55983907 - 55983990
Alignment:
| Q |
222 |
gagagaaaaactcataacaagaggggtacaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatat |
305 |
Q |
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| T |
55983907 |
gagagaaaaactcataagacgaggggttcaatgtcaaatttcatgtccttttagagaagaggaaaatgaaagtgattgacatat |
55983990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 55983824 - 55983861
Alignment:
| Q |
170 |
gagtggacaaagttatggaggttaagagtaccaaaaaa |
207 |
Q |
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| T |
55983824 |
gagtggacaaagttgtggaggttaagagtaccaaaaaa |
55983861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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