View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19124_low_8 (Length: 365)
Name: NF19124_low_8
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19124_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 52723002 - 52722664
Alignment:
| Q |
9 |
agcagagacaggggcagaacctgttgggatttcgaacatgtttcctagttttctattcatgatgctggcttgactaagaaagaaggttgacacttgagcg |
108 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52723002 |
agcaaagacagggacagaacctgttgggatttcgaacttgtttcctagttttctattcatgatgctggcttgactaagaaagaaggttgacacttgagcg |
52722903 |
T |
|
| Q |
109 |
aaagaaatagcaagagcaatggtagaggccgatactggaaggattttaacgaatgatttgaattctttgacttgtgtcactgtgcatacactccatctgt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52722902 |
aaagaaatagcaagagcaatggtagaggccgatactggaaggattttaacgaatgatttgaattcttcgacttgtgtcactgtgcatacactccatctgt |
52722803 |
T |
|
| Q |
209 |
tgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttattctcatagccaagattaaattaatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52722802 |
tgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttattctcatagccaagattaaattaatt |
52722703 |
T |
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| Q |
309 |
aacatcacactttagttatgtaatttcgattatacatta |
347 |
Q |
| |
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| T |
52722702 |
aacatcacactttagttatgcaatttcgattatacatta |
52722664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 52713975 - 52713651
Alignment:
| Q |
14 |
agacaggggcagaacctgttgggatttcgaacatgtttcctagttttctattcatgatgctggcttgactaagaaagaaggttgacacttgagcgaaaga |
113 |
Q |
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|||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
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| T |
52713975 |
agacggggacagaacctgtcgggatttcgaagttgtttcctagttttctattcatgatgctggcttgacttaaaaagaaggttgacatttgagcgaaaga |
52713876 |
T |
|
| Q |
114 |
aatagcaagagcaatggtagaggccgatactggaaggattttaacgaatgatttgaattctttgacttgtgtcactgtgcatacactccatctgttgcta |
213 |
Q |
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| T |
52713875 |
aatagcaagagcaatggtagatgcccacactggaaggattttaatgaatgatttgaactcttccacttgtgtcactgtgcatacactccatctgttgctg |
52713776 |
T |
|
| Q |
214 |
actgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaattaatttgctccaatcttattctcata-gccaagattaaattaattaaca |
312 |
Q |
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| T |
52713775 |
agtgtgtccttttctgtaataactgctgctttgtcaaaaaatctgcaaaattaatttgctccgatcttattctcatataccaagattaaattaatcaaca |
52713676 |
T |
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| Q |
313 |
tcacactttagttatgtaatttcgat |
338 |
Q |
| |
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|||| | |||||||||| |||||||| |
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| T |
52713675 |
tcacgc-ttagttatgtgatttcgat |
52713651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 64 - 283
Target Start/End: Complemental strand, 52699651 - 52699432
Alignment:
| Q |
64 |
ttcatgatgctggcttgactaagaaagaaggttgacacttgagcgaaagaaatagcaagagcaatggtagaggccgatactggaaggattttaacgaatg |
163 |
Q |
| |
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|||||||| |||||||||| ||||| ||||||||| |||||| ||||| |||| || |||||||||||| ||| | |||||||||||||||| ||||| |
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| T |
52699651 |
ttcatgattttggcttgacttagaaaccaggttgacatttgagccaaagagatagaaatagcaatggtagatgcccacactggaaggattttaatgaatg |
52699552 |
T |
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| Q |
164 |
atttgaattctttgacttgtgtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaa |
263 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52699551 |
atttgaattcttcgacttgtgtcactgtgcatacactccatctgttgctaactgtgtctttttctgttataactgctgctttgtcaaaaaacctgcaaaa |
52699452 |
T |
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| Q |
264 |
ttaatttgctccaatcttat |
283 |
Q |
| |
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|||||||||||||||||||| |
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| T |
52699451 |
ttaatttgctccaatcttat |
52699432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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