View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19124_low_9 (Length: 322)

Name: NF19124_low_9
Description: NF19124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19124_low_9
NF19124_low_9
[»] chr7 (6 HSPs)
chr7 (13-308)||(41242964-41243265)
chr7 (107-167)||(17262475-17262535)
chr7 (224-279)||(8722943-8722998)
chr7 (86-194)||(8751524-8751634)
chr7 (37-67)||(35035423-35035453)
chr7 (112-199)||(13781663-13781752)
[»] chr2 (5 HSPs)
chr2 (86-304)||(22859432-22859652)
chr2 (121-194)||(26404087-26404162)
chr2 (92-137)||(33411791-33411836)
chr2 (112-168)||(15139770-15139826)
chr2 (13-61)||(43829826-43829874)
[»] chr4 (9 HSPs)
chr4 (85-288)||(13160521-13160725)
chr4 (112-234)||(22323284-22323408)
chr4 (13-65)||(55240643-55240695)
chr4 (19-69)||(23564555-23564605)
chr4 (86-137)||(28067272-28067323)
chr4 (224-279)||(46543244-46543299)
chr4 (13-60)||(55240441-55240488)
chr4 (98-168)||(136786-136856)
chr4 (20-64)||(36165464-36165508)
[»] chr1 (4 HSPs)
chr1 (86-213)||(16631462-16631591)
chr1 (112-238)||(34504313-34504441)
chr1 (19-64)||(3371664-3371709)
chr1 (98-288)||(24309092-24309285)
[»] chr5 (3 HSPs)
chr5 (107-233)||(23256242-23256370)
chr5 (86-194)||(20252422-20252532)
chr5 (86-139)||(33650333-33650386)
[»] chr6 (3 HSPs)
chr6 (98-172)||(20209346-20209420)
chr6 (98-172)||(22103369-22103443)
chr6 (86-167)||(29359483-29359564)
[»] chr3 (7 HSPs)
chr3 (86-238)||(19668349-19668503)
chr3 (13-64)||(20490930-20490982)
chr3 (13-69)||(30130788-30130844)
chr3 (13-69)||(30135508-30135564)
chr3 (13-69)||(30141637-30141693)
chr3 (13-69)||(30145059-30145115)
chr3 (28-69)||(50196928-50196969)
[»] scaffold0074 (1 HSPs)
scaffold0074 (125-194)||(36934-37005)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 41243265 - 41242964
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaacctaacttatatgattg----gttgggtggtaggtgatggtaggaat 108  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||    
T  41243265 aatatacttgagtaacctcatccgttgagctaacttttgggatgagatccaaacctagcttatatgattgattggttgggtggtaggtgatggtaggaat 41243166  T
Q  109 acgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgcttat--gatttatcagtgtataaggagtattcgatggcgg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41243165 acgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgcttatatgatttatcagtgtataaggagtattcgatggcgg 41243066  T
Q  207 aaatggcaaatttggggtgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggaggaagaaagtgtcaaggagtgtagtgctat 306  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41243065 aaatggcaaatttggggtggggggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggaggaagaaagtgtcagggagtgtagtgctat 41242966  T
Q  307 gt 308  Q
    ||    
T  41242965 gt 41242964  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 17262475 - 17262535
Alignment:
Q  107 atacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg 167  Q
    |||| ||||||||||||||||| | | ||| |||||| || ||||||||||||||||||||    
T  17262475 atactttcttttggactgataaattgctggatggagcacctttaaggcttcagttcagccg 17262535  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 8722943 - 8722998
Alignment:
Q  224 tgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggagga 279  Q
    |||||||||||||||||||||||| | |||| |||||| |||| |||||| |||||    
T  8722943 tgggaggaaggtggtgaggcgtggagttggcggagacgtttgtgggcgtgagagga 8722998  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 8751524 - 8751634
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgc--ttatgatttatcagt 183  Q
    ||||||||||| ||||| | |  || ||||||||||||||||||||| | ||||||| ||| ||||   ||||||||||||||   ||||||||||| ||    
T  8751524 gggtggtaggtaatggtcgtagcactttcttttggactgataattggctaggtggagttcctttaaaaattcagttcagccgcctgtatgatttatcggt 8751623  T
Q  184 gtataaggagt 194  Q
      |||||||||    
T  8751624 ccataaggagt 8751634  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 35035453 - 35035423
Alignment:
Q  37 ttgagctagcttttgggatgagatccaaacc 67  Q
    |||||||||||||||||||||||||||||||    
T  35035453 ttgagctagcttttgggatgagatccaaacc 35035423  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 13781752 - 13781663
Alignment:
Q  112 ttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg-ct-tatgatttatcagtgtataaggagtattcg 199  Q
    ||||||||||||||||| ||| |||||| |||||| |||| |||||| ||||| || || ||||| ||||||||| || |||||| ||||    
T  13781752 ttcttttggactgataactggctgggtgaagctcctttaaagcttcaattcagtcgtctgtatgagttatcagtgcatgaggagtgttcg 13781663  T

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Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 86 - 304
Target Start/End: Complemental strand, 22859652 - 22859432
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgcttat--gatttatcagt 183  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  22859652 gggtagtaggtgatggtaggaatacgttcttttggactgataactggttgggtggagcccccttaaggcttcagttcagccgcttatttgatttatcagt 22859553  T
Q  184 gtataaggagtattcgatggcggaaatggcaaatttggggtgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggaggaagaa 283  Q
    |||||||||||||||  |||| || |||||||||||||||| |||||| |||||||||| |||||| |||| |||||| |||||||| |||||||||||     
T  22859552 gtataaggagtattcagtggcagatatggcaaatttggggtaggaggacggtggtgaggagtggggttggcggagacgcttgttggcatgggaggaagag 22859453  T
Q  284 agtgtcaaggagtgtagtgct 304  Q
    ||||||| |||||| ||||||    
T  22859452 agtgtcagggagtgcagtgct 22859432  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 26404087 - 26404162
Alignment:
Q  121 actgataattggttgggtggagctcccttaaggcttcagttcagccg--cttatgatttatcagtgtataaggagt 194  Q
    ||||||||||||||||||||||| || ||||||||||| || | |||   |||||| ||||||||| |||||||||    
T  26404087 actgataattggttgggtggagcacctttaaggcttcattttaaccgtctttatgagttatcagtgcataaggagt 26404162  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 33411791 - 33411836
Alignment:
Q  92 taggtgatggtaggaatacgttcttttggactgataattggttggg 137  Q
    ||||||||||||||||||| || ||||||  |||||||||||||||    
T  33411791 taggtgatggtaggaatactttattttggtatgataattggttggg 33411836  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15139770 - 15139826
Alignment:
Q  112 ttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgc 168  Q
    ||||||| |||| |||||||| ||||||||| ||| ||||  |||||||||||||||    
T  15139770 ttcttttagactaataattggctgggtggagttcctttaaaacttcagttcagccgc 15139826  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 43829874 - 43829826
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatc 61  Q
    ||||| |||||||| |||||||  ||||||||||| |||||||||||||    
T  43829874 aatatgcttgagtaccctcatccattgagctagctgttgggatgagatc 43829826  T

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Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 13160725 - 13160521
Alignment:
Q  85 tgggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgctta--tgatttatcag 182  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||| ||||||  |||||||||||    
T  13160725 tgggtagtaggtgatggtaggaatacgttcttttggactgataattggttgggtgggtctctcttaaggctccagttcagtcgcttatttgatttatcag 13160626  T
Q  183 tgtataaggagtattcgatggcggaaatggcaaatttggggtgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggaggaaga 282  Q
    || ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| |||||||| |||||| || ||||| |||||||||||    
T  13160625 tgcataaggagtattcgatggcggatgtggctaatttggggtgggaggaaggtggtgaggcgt-ggggtggcggagacgtttattggcttgggaggaaga 13160527  T
Q  283 aagtgt 288  Q
     |||||    
T  13160526 tagtgt 13160521  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 22323408 - 22323284
Alignment:
Q  112 ttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgc--ttatgatttatcagtgtataaggagtattcgatggcggaaa 209  Q
    |||||||||||||||| |||||||||||||| ||||||||  ||||||||||| |||  |||||| |||| |||| ||||||| | || | ||| |||||    
T  22323408 ttcttttggactgatatttggttgggtggagttcccttaaaacttcagttcagtcgcctttatgagttattagtgcataaggattgtttggtggaggaaa 22323309  T
Q  210 tggcaaatttggggtgggaggaagg 234  Q
    |||| |   ||||||||||||||||    
T  22323308 tggcgagagtggggtgggaggaagg 22323284  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 55240643 - 55240695
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaa 65  Q
    ||||| |||||||| |||||||| |||||| ||||||||||||||||||||||    
T  55240643 aatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 55240695  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 23564605 - 23564555
Alignment:
Q  19 cttgagtaacctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    |||||||| |||||||  |||||||| ||||||||||||||||||||||||    
T  23564605 cttgagtaccctcatcctttgagctaacttttgggatgagatccaaaccta 23564555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 28067272 - 28067323
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttggg 137  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||  ||||||||    
T  28067272 gggtggtaggtaatggtaggaatactttcttttggacagatatctggttggg 28067323  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 46543299 - 46543244
Alignment:
Q  224 tgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggagga 279  Q
    |||||||||||||||||||| ||| | |||| |||||| |||| ||||||||||||    
T  46543299 tgggaggaaggtggtgaggcttggagttggcggagacggttgtgggcgtgggagga 46543244  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 55240441 - 55240488
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagat 60  Q
    |||||||||||||| |||||||  ||||| ||||||||||||||||||    
T  55240441 aatatacttgagtatcctcatcctttgagttagcttttgggatgagat 55240488  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 136856 - 136786
Alignment:
Q  98 atggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgc 168  Q
    |||| ||||| || |||||||||||||| |||||||||||||||| ||| ||||  ||||| | |||||||    
T  136856 atggcaggaacactttcttttggactgacaattggttgggtggagttccattaaaacttcaatccagccgc 136786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 36165508 - 36165464
Alignment:
Q  20 ttgagtaacctcatctgttgagctagcttttgggatgagatccaa 64  Q
    ||||||| |||||||| ||| ||||| ||||||||||||||||||    
T  36165508 ttgagtaccctcatcttttgtgctagattttgggatgagatccaa 36165464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 16631462 - 16631591
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg-ct-tatgatttatcagt 183  Q
    ||||||||||| ||||||| || || |||||||||| |||||| ||||||||||||||||| |||| |||||||||||| || || ||||| || |||||    
T  16631462 gggtggtaggtaatggtagaaacactttcttttggattgataactggttgggtggagctcctttaaagcttcagttcagtcgtctatatgagttgtcagt 16631561  T
Q  184 gtataaggagtattcgatggcggaaatggc 213  Q
    |  |||||||| |||||||| ||| |||||    
T  16631562 gcttaaggagtgttcgatggaggacatggc 16631591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 34504313 - 34504441
Alignment:
Q  112 ttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg-ct-tatgatttatcagtgtataaggagtattcgatggcggaaa 209  Q
    ||||||||||||||||| ||| ||||||| | ||| |||| |||||| ||||| || || |||||||| |||||  ||||||||| |||| ||||||| |    
T  34504313 ttcttttggactgataactggctgggtggggttcctttaaagcttcaattcagtcgtctatatgatttgtcagttcataaggagtgttcggtggcggata 34504412  T
Q  210 tggcaaatttggggtgggaggaaggtggt 238  Q
    |||| | | |||||||||| |||||||||    
T  34504413 tggcgagtctggggtgggaagaaggtggt 34504441  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3371664 - 3371709
Alignment:
Q  19 cttgagtaacctcatctgttgagctagcttttgggatgagatccaa 64  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||    
T  3371664 cttgagtaccctcatcttttgaggtagcttttgggatgagatccaa 3371709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 24309285 - 24309092
Alignment:
Q  98 atggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgct--tatgatttatcagtgtataaggagta 195  Q
    ||||||| || || ||||||||||| || ||  || | ||||| |||||||||| |||||||||||| || |  ||||| || |||||| |||||||||     
T  24309285 atggtagaaacacattcttttggacggacaaccggctaggtggggctcccttaaagcttcagttcagtcgtttgtatgagttgtcagtgcataaggagtg 24309186  T
Q  196 ttcgatggcggaaatgg-caaatttggggtgggaggaaggtggtgaggcgtgggggtggcagagacgattgttggcgtgggaggaagaaagtgt 288  Q
     | | ||| ||| |||| || ||| |||||||||  |||||||| | || ||||| |||  ||| || ||||||||||||||||| || |||||    
T  24309185 cttggtggaggacatggtcagattgggggtgggaataaggtggtaatgcttggggatggaggaggcgtttgttggcgtgggaggaggatagtgt 24309092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 23256242 - 23256370
Alignment:
Q  107 atacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg-ct-tatgatttatcagtgtataaggagtattcgatggc 204  Q
    |||| |||||||||||| |||||||||||| ||||| ||| |||| |||  |||||||||| || | ||| ||||||||| |||||||||||||| |||     
T  23256242 atactttcttttggactaataattggttggatggagttccattaaagctctagttcagccgtctctttgagttatcagtgcataaggagtattcggtgga 23256341  T
Q  205 ggaaatggcaaatttggggtgggaggaag 233  Q
    ||| ||||  | |||||||||||||||||    
T  23256342 ggatatggagagtttggggtgggaggaag 23256370  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 20252532 - 20252422
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg--cttatgatttatcagt 183  Q
    ||||||||||  ||||| | ||||| ||||||||||| ||||||||||||||||||| ||| ||||   |||||||||  ||  ||| ||| ||||| ||    
T  20252532 gggtggtaggcaatggtcgtaatactttcttttggacagataattggttgggtggagttcctttaaaaattcagttcaatcgtccttttgacttatctgt 20252433  T
Q  184 gtataaggagt 194  Q
    |||||||||||    
T  20252432 gtataaggagt 20252422  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 33650333 - 33650386
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtg 139  Q
    ||||||| || |||||  |||| || ||||||||||||||||||||||||||||    
T  33650333 gggtggttggagatgggcggaaaacattcttttggactgataattggttgggtg 33650386  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 20209346 - 20209420
Alignment:
Q  98 atggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgcttat 172  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| |||| || |||| ||||||||||||||| ||||    
T  20209346 atggtagaaatactttcttttggactgataactggttgggttgagcacctttaaagcttcagttcagccgtttat 20209420  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 22103369 - 22103443
Alignment:
Q  98 atggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgcttat 172  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| |||| || |||| ||||||||||||||| ||||    
T  22103369 atggtagaaatactttcttttggactgataactggttgggttgagcacctttaaagcttcagttcagccgtttat 22103443  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 29359483 - 29359564
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccg 167  Q
    ||||||||||| ||||| | || || ||||||||||||||||||| ||||||||||| ||||||||   | |||||||||||    
T  29359483 gggtggtaggtaatggtcgtaacactttcttttggactgataattagttgggtggagttcccttaaaaatccagttcagccg 29359564  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 19668503 - 19668349
Alignment:
Q  86 gggtggtaggtgatggtaggaatacgttcttttggactgataattggttgggtggagctcccttaaggcttcagttcagccgc--ttatgatttatcagt 183  Q
    ||||||||||  |||| || || || ||||||||||||||||| ||  ||| ||||| ||| ||||  |||||||||||||||  |||||| ||||||||    
T  19668503 gggtggtaggaaatgggagtaaaacattcttttggactgataactgcatggctggagttcctttaaatcttcagttcagccgcctttatgagttatcagt 19668404  T
Q  184 gtataaggagtattcgatggcggaaatggcaaatttggggtgggaggaaggtggt 238  Q
      ||||||| | |||| ||| ||| ||||| |   ||||||| ||||||||||||    
T  19668403 taataaggattgttcggtggaggagatggcgagagtggggtgagaggaaggtggt 19668349  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 20490930 - 20490982
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagc-ttttgggatgagatccaa 64  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||||||||||    
T  20490930 aatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaa 20490982  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30130844 - 30130788
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    ||||| |||||||| | |||||  ||||||||| |||||||||||||||||||||||    
T  30130844 aatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaaccta 30130788  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30135564 - 30135508
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    ||||| |||||||| |||||||  |||||||| ||||||||||||||||||| ||||    
T  30135564 aatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagccta 30135508  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30141693 - 30141637
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    ||||| |||||||| |||||||  |||||||| ||||||||||||||||||| ||||    
T  30141693 aatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagccta 30141637  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 30145115 - 30145059
Alignment:
Q  13 aatatacttgagtaacctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    ||||| |||||||| |||||||  |||||||| ||||||||||||||||||| ||||    
T  30145115 aatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagccta 30145059  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 50196928 - 50196969
Alignment:
Q  28 cctcatctgttgagctagcttttgggatgagatccaaaccta 69  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  50196928 cctcatcctttgagctaacttttgggatgagatccaaaccta 50196969  T

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Target: scaffold0074 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 37005 - 36934
Alignment:
Q  125 ataattggttgggtggagctcccttaaggcttcagttcagccgc--ttatgatttatcagtgtataaggagt 194  Q
    |||||||||||| ||||||||| ||||||||| | |||||||||  |||||| |||||| || |||||||||    
T  37005 ataattggttggatggagctcctttaaggctttatttcagccgcctttatgagttatcattgcataaggagt 36934  T

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