View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_high_2 (Length: 430)
Name: NF19125_high_2
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Complemental strand, 6315347 - 6314923
Alignment:
| Q |
7 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcctcgtgttaa |
106 |
Q |
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| T |
6315347 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcctcgtgttaa |
6315248 |
T |
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| Q |
107 |
tctccaaattctaagtattt-gctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagct |
205 |
Q |
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| T |
6315247 |
tctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagct |
6315148 |
T |
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| Q |
206 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaactctgcaca |
305 |
Q |
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| T |
6315147 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaattctgcaca |
6315048 |
T |
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| Q |
306 |
tgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggtcactattcccctaagctgttgtagtttcttgcgattctaagaagatatgccttag |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
6315047 |
tgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatgccttag |
6314948 |
T |
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| Q |
406 |
tagttgctgtgtgtaggaagggaaa |
430 |
Q |
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| T |
6314947 |
gaggtgctgtgtgtaggaagggaaa |
6314923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 6318236 - 6318129
Alignment:
| Q |
249 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcat |
346 |
Q |
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| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatgaaactg--acctacatacgtttgaatttaaggtcat |
6318139 |
T |
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| Q |
347 |
aggtcactat |
356 |
Q |
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| T |
6318138 |
atttcactat |
6318129 |
T |
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