View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_1 (Length: 471)
Name: NF19125_low_1
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_1 |
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| [»] scaffold0339 (3 HSPs) |
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| [»] scaffold1472 (2 HSPs) |
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Alignment Details
Target: scaffold0339 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 2172 - 1735
Alignment:
| Q |
16 |
attctaggctaggaatatagatatgtcatatgtgatatcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaattgccttt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2172 |
attctaggctaggaatatagatatgtcatatgtgatatcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaattgccttt |
2073 |
T |
|
| Q |
116 |
gtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagtgaagaagctacaagaaatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2072 |
gtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagt---gaagctacaggaaatt |
1976 |
T |
|
| Q |
216 |
ttatttcatcttacatatagagaattccattattttcctttctatcaaattttggtgtcttgaggcagtcccatcacagctttatctaggaaagaccagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1975 |
ttatttcatcttacatatagagaattccattattttcctttctatcaaattttggtgtcttgaggcagtcccatcacagctttatctaggaaagaccagc |
1876 |
T |
|
| Q |
316 |
aagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgt-aattttaattgtaatgtcattgaaaatttgactac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1875 |
aagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaaattttaattgtaatgtcattgaaaatttgactac |
1776 |
T |
|
| Q |
415 |
atgcaatattgttgttcactcaaactactgaaggataatta |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1775 |
atgcaatattgttgttcactcaaactactgaaggataatta |
1735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 106 - 455
Target Start/End: Original strand, 17150 - 17515
Alignment:
| Q |
106 |
aattgcctttgtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagtgaagaagct |
205 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
17150 |
aattgcctttgtgtcttcagcatctgcaattgagaagtggacctcgttgacagggctggttggtaaacttaaaggaatttgaaccttgagtgaagaagct |
17249 |
T |
|
| Q |
206 |
acaagaaattttatttcatcttacatatagagaattccatt-attttcctttct-----atcaaattttggtgtctt-gaggcagtcccatcacagcttt |
298 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||| | || | |||||||||||||||| | |||||||||||||||||||| |
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| T |
17250 |
acaagaaattttatttcatcttagatatagagaattccattaattttctctgctggctcaccaaattttggtgtcttgggggcagtcccatcacagcttt |
17349 |
T |
|
| Q |
299 |
atctag------gaaagaccagcaagctcatttttcacggatc----atgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaattttaat |
388 |
Q |
| |
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|| ||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
17350 |
atttaggaaagagaaagaccaacaagctcatttttcacggatcatgaatgaagtttgagc-ttggatgtaaattgtctggcacaaaattgtaattttaat |
17448 |
T |
|
| Q |
389 |
tgtaatgtcattgaaaatttgactacatgcaatattgttgttcactcaaactactgaaggataatta |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
17449 |
tgtaatgtcattgaaaatttgactacatgcaatattgttgttccctcaaactactgaaggataatta |
17515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 17050 - 17104
Alignment:
| Q |
53 |
tcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaat |
108 |
Q |
| |
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||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
17050 |
tcttcctcaaaatatag-ctctgagatttcttcaagcacacacactaactcttaat |
17104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Complemental strand, 47272947 - 47272510
Alignment:
| Q |
16 |
attctaggctaggaatatagatatgtcatatgtgatatcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaattgccttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47272947 |
attctaggctaggaatatagatatgtcatatgtgatatcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaattgccttt |
47272848 |
T |
|
| Q |
116 |
gtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagtgaagaagctacaagaaatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
47272847 |
gtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagt---gaagctacaggaaatt |
47272751 |
T |
|
| Q |
216 |
ttatttcatcttacatatagagaattccattattttcctttctatcaaattttggtgtcttgaggcagtcccatcacagctttatctaggaaagaccagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47272750 |
ttatttcatcttacatatagagaattccattattttcctttctatcaaattttggtgtcttgaggcagtcccatcacagctttatctaggaaagaccagc |
47272651 |
T |
|
| Q |
316 |
aagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgt-aattttaattgtaatgtcattgaaaatttgactac |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47272650 |
aagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaaattttaattgtaatgtcattgaaaatttgactac |
47272551 |
T |
|
| Q |
415 |
atgcaatattgttgttcactcaaactactgaaggataatta |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47272550 |
atgcaatattgttgttcactcaaactactgaaggataatta |
47272510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1472 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold1472
Description:
Target: scaffold1472; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 106 - 455
Target Start/End: Original strand, 866 - 1231
Alignment:
| Q |
106 |
aattgcctttgtgtcttcagcctctgcaattgagaagtggacctctttgacagggctggttggtaaacttaaagggatttgaacattgagtgaagaagct |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
866 |
aattgcctttgtgtcttcagcatctgcaattgagaagtggacctcgttgacagggctggttggtaaacttaaaggaatttgaaccttgagtgaagaagct |
965 |
T |
|
| Q |
206 |
acaagaaattttatttcatcttacatatagagaattccatt-attttcctttct-----atcaaattttggtgtctt-gaggcagtcccatcacagcttt |
298 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||| | || | |||||||||||||||| | |||||||||||||||||||| |
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|
| T |
966 |
acaagaaattttatttcatcttagatatagagaattccattaattttctctgctggctcaccaaattttggtgtcttgggggcagtcccatcacagcttt |
1065 |
T |
|
| Q |
299 |
atctag------gaaagaccagcaagctcatttttcacggatc----atgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaattttaat |
388 |
Q |
| |
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|| ||| ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1066 |
atttaggaaagagaaagaccaacaagctcatttttcacggatcatgaatgaagtttgagc-ttggatgtaaattgtctggcacaaaattgtaattttaat |
1164 |
T |
|
| Q |
389 |
tgtaatgtcattgaaaatttgactacatgcaatattgttgttcactcaaactactgaaggataatta |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1165 |
tgtaatgtcattgaaaatttgactacatgcaatattgttgttccctcaaactactgaaggataatta |
1231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1472; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 766 - 820
Alignment:
| Q |
53 |
tcttcctcaaaatgtaggctctaagatttcttcaagcacacacactaactcttaat |
108 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
766 |
tcttcctcaaaatatag-ctctgagatttcttcaagcacacacactaactcttaat |
820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 21084548 - 21084636
Alignment:
| Q |
297 |
ttatctaggaaagaccagcaagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaattttaat |
388 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| || ||||||||||| | | |||||| ||||||||| || ||||||||||||||||| |
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|
| T |
21084548 |
ttatctaggaaagaccaacaagctcacttttcatggctcatgaagtttaaac-ttggatccaaattgtct--cacaaaattgtaattttaat |
21084636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 388
Target Start/End: Original strand, 21039502 - 21039587
Alignment:
| Q |
300 |
tctaggaaagaccagcaagctcatttttcacggatcatgaagtttgagctttggatgtaaattgtctggcaaaaaattgtaattttaat |
388 |
Q |
| |
|
|||||||||||||| |||||||| |||||| || ||||||||||| | | |||||| ||||||||| || ||||||||||||||||| |
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| T |
21039502 |
tctaggaaagaccaacaagctcacttttcatggctcatgaagtttaaac-ttggatccaaattgtct--cacaaaattgtaattttaat |
21039587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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