View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19125_low_13 (Length: 239)

Name: NF19125_low_13
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19125_low_13
NF19125_low_13
[»] chr7 (26 HSPs)
chr7 (24-155)||(30307442-30307573)
chr7 (24-155)||(5122772-5122902)
chr7 (24-154)||(5157725-5157854)
chr7 (24-149)||(39202302-39202426)
chr7 (24-149)||(39213673-39213797)
chr7 (24-155)||(26750637-26750769)
chr7 (24-155)||(45730327-45730457)
chr7 (24-155)||(45741229-45741359)
chr7 (24-149)||(7232362-7232486)
chr7 (24-149)||(26505035-26505159)
chr7 (24-134)||(15602912-15603022)
chr7 (24-149)||(15354238-15354364)
chr7 (24-149)||(5245325-5245451)
chr7 (24-155)||(11415293-11415424)
chr7 (24-155)||(11430277-11430408)
chr7 (24-82)||(20591817-20591875)
chr7 (64-132)||(10441313-10441381)
chr7 (170-201)||(5122911-5122942)
chr7 (170-201)||(5157864-5157895)
chr7 (170-201)||(11415253-11415284)
chr7 (170-201)||(20591932-20591963)
chr7 (170-201)||(26750597-26750628)
chr7 (170-201)||(30307582-30307613)
chr7 (172-201)||(5245468-5245497)
chr7 (172-201)||(15354193-15354222)
chr7 (111-155)||(20591879-20591923)
[»] chr3 (37 HSPs)
chr3 (24-155)||(14452580-14452711)
chr3 (24-155)||(8227654-8227784)
chr3 (24-155)||(9529498-9529628)
chr3 (24-155)||(10599764-10599895)
chr3 (24-155)||(18045747-18045878)
chr3 (24-155)||(18061811-18061942)
chr3 (24-149)||(28358910-28359034)
chr3 (25-149)||(28012108-28012231)
chr3 (24-155)||(4622749-4622879)
chr3 (24-155)||(4633731-4633861)
chr3 (24-155)||(18002101-18002231)
chr3 (24-149)||(4448723-4448847)
chr3 (24-155)||(8345491-8345620)
chr3 (24-155)||(10413175-10413305)
chr3 (24-149)||(4693579-4693705)
chr3 (24-149)||(34802083-34802209)
chr3 (24-149)||(4683490-4683616)
chr3 (47-155)||(8581137-8581245)
chr3 (85-155)||(4888013-4888082)
chr3 (89-149)||(1776165-1776224)
chr3 (85-149)||(5517425-5517489)
chr3 (85-149)||(20053498-20053561)
chr3 (85-149)||(20076158-20076221)
chr3 (170-201)||(8345629-8345660)
chr3 (170-201)||(9529638-9529669)
chr3 (170-201)||(10413313-10413344)
chr3 (170-201)||(10599904-10599935)
chr3 (170-201)||(14452540-14452571)
chr3 (170-201)||(18002240-18002271)
chr3 (170-201)||(18045887-18045918)
chr3 (170-201)||(18061951-18061982)
chr3 (171-201)||(27339883-27339913)
chr3 (172-201)||(4683632-4683661)
chr3 (172-201)||(4693721-4693750)
chr3 (172-201)||(34802037-34802066)
chr3 (84-128)||(10721990-10722034)
chr3 (84-128)||(24217257-24217301)
[»] chr5 (12 HSPs)
chr5 (24-155)||(23431555-23431686)
chr5 (24-154)||(35397428-35397557)
chr5 (24-155)||(32450355-32450485)
chr5 (24-149)||(33772063-33772187)
chr5 (24-155)||(29882847-29882977)
chr5 (24-149)||(33787020-33787144)
chr5 (24-149)||(20194549-20194675)
chr5 (170-201)||(23431514-23431545)
chr5 (170-201)||(29882806-29882837)
chr5 (170-201)||(32450315-32450346)
chr5 (171-201)||(35397386-35397416)
chr5 (172-201)||(20194504-20194533)
[»] chr2 (14 HSPs)
chr2 (24-155)||(23120546-23120677)
chr2 (24-155)||(5392704-5392835)
chr2 (24-155)||(12650080-12650210)
chr2 (24-155)||(12665002-12665132)
chr2 (24-149)||(24044371-24044497)
chr2 (24-154)||(33844200-33844330)
chr2 (24-149)||(34856307-34856432)
chr2 (24-149)||(34871369-34871494)
chr2 (170-201)||(12650219-12650250)
chr2 (170-201)||(12665141-12665172)
chr2 (170-201)||(23120686-23120717)
chr2 (170-201)||(33844339-33844370)
chr2 (172-201)||(24044514-24044543)
chr2 (64-120)||(28480237-28480293)
[»] scaffold0089 (2 HSPs)
scaffold0089 (24-155)||(52581-52712)
scaffold0089 (170-201)||(52541-52572)
[»] chr6 (30 HSPs)
chr6 (24-155)||(26994558-26994689)
chr6 (24-155)||(27645595-27645726)
chr6 (24-155)||(16763044-16763175)
chr6 (24-155)||(27028877-27029007)
chr6 (24-155)||(15402896-15403026)
chr6 (24-155)||(15414683-15414813)
chr6 (24-155)||(15430276-15430406)
chr6 (24-155)||(16744642-16744773)
chr6 (24-155)||(26983652-26983782)
chr6 (24-155)||(27034713-27034843)
chr6 (24-155)||(14135355-14135485)
chr6 (24-155)||(14147427-14147557)
chr6 (24-155)||(16560980-16561110)
chr6 (24-149)||(28159501-28159625)
chr6 (24-149)||(28170542-28170666)
chr6 (24-149)||(4217870-4217994)
chr6 (64-132)||(21709907-21709975)
chr6 (64-132)||(23926676-23926744)
chr6 (170-201)||(15430236-15430267)
chr6 (170-201)||(16561119-16561150)
chr6 (170-201)||(16744781-16744812)
chr6 (170-201)||(16763183-16763214)
chr6 (170-201)||(26983791-26983822)
chr6 (170-201)||(27029016-27029047)
chr6 (170-201)||(27034852-27034883)
chr6 (170-201)||(27645735-27645766)
chr6 (172-201)||(26994700-26994729)
chr6 (84-132)||(16588135-16588183)
chr6 (84-132)||(16607197-16607245)
chr6 (64-120)||(25551130-25551186)
[»] chr4 (23 HSPs)
chr4 (24-155)||(24582818-24582949)
chr4 (24-155)||(24597646-24597777)
chr4 (24-155)||(13440169-13440299)
chr4 (24-155)||(30277410-30277540)
chr4 (24-155)||(20307940-20308070)
chr4 (24-149)||(11926806-11926930)
chr4 (24-149)||(24810272-24810396)
chr4 (24-149)||(5200823-5200949)
chr4 (85-155)||(5404950-5405020)
chr4 (85-155)||(17008616-17008685)
chr4 (85-155)||(17022580-17022649)
chr4 (64-132)||(24923589-24923657)
chr4 (170-201)||(5404910-5404941)
chr4 (170-201)||(13440308-13440339)
chr4 (170-201)||(17008693-17008724)
chr4 (170-201)||(20308079-20308110)
chr4 (170-201)||(24582778-24582809)
chr4 (170-201)||(24597606-24597637)
chr4 (170-201)||(30277549-30277580)
chr4 (172-201)||(5200777-5200806)
chr4 (172-201)||(12426345-12426374)
chr4 (172-201)||(40562226-40562255)
chr4 (193-229)||(14659760-14659796)
[»] scaffold0112 (2 HSPs)
scaffold0112 (24-155)||(10903-11034)
scaffold0112 (170-201)||(11043-11074)
[»] chr8 (14 HSPs)
chr8 (24-155)||(14360403-14360534)
chr8 (24-149)||(40699342-40699466)
chr8 (24-149)||(3716740-3716864)
chr8 (24-155)||(15778496-15778627)
chr8 (24-155)||(15768083-15768214)
chr8 (24-155)||(21925913-21926045)
chr8 (24-155)||(28262015-28262146)
chr8 (24-93)||(31340497-31340566)
chr8 (35-132)||(17974744-17974841)
chr8 (170-201)||(14360363-14360394)
chr8 (170-201)||(15768223-15768254)
chr8 (170-201)||(15778636-15778667)
chr8 (170-201)||(21926055-21926086)
chr8 (170-201)||(31340411-31340442)
[»] scaffold0489 (1 HSPs)
scaffold0489 (24-149)||(2340-2464)
[»] chr1 (4 HSPs)
chr1 (24-155)||(28149245-28149375)
chr1 (24-155)||(28159719-28159849)
chr1 (26-155)||(20322294-20322420)
chr1 (1-35)||(6314934-6314968)
[»] scaffold0355 (1 HSPs)
scaffold0355 (24-109)||(17338-17424)
[»] scaffold1848 (1 HSPs)
scaffold1848 (24-149)||(740-866)
[»] scaffold0431 (1 HSPs)
scaffold0431 (172-201)||(3601-3630)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 30307442 - 30307573
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  30307442 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 30307541  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||||||||| |||||    
T  30307542 tgcttcctgcaattttacactatcttttgtgc 30307573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 5122772 - 5122902
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||    
T  5122772 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttaaaccgttagatctttgatctaacggtcactg 5122871  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  5122872 tgcttcctgc-attttacactatcttttgtgc 5122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 5157725 - 5157854
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||    
T  5157725 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttttgtttaaaccgttagatctttgatctaacggtcactg 5157824  T
Q  124 tgcttcctgcaaatttacactatcttgtgtg 154  Q
    |||||||||| | ||||||||||||| ||||    
T  5157825 tgcttcctgc-attttacactatcttttgtg 5157854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 39202426 - 39202302
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  39202426 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 39202327  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| |||||||||||||||    
T  39202326 tgcttcctgc-aatttacactatctt 39202302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 39213797 - 39213673
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  39213797 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 39213698  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| |||||||||||||||    
T  39213697 tgcttcctgc-aatttacactatctt 39213673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 26750769 - 26750637
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtga-ctttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  26750769 gctgctgtgtatttgattttgtttcctgtgtgtgatctttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcact 26750670  T
Q  123 gtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||| ||||||||||||| |||||    
T  26750669 gtgcttcctgcaattttacactatcttttgtgc 26750637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 45730327 - 45730457
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  45730327 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 45730426  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  45730427 tgcttcctgc-attttacactatcttttgtgc 45730457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 45741229 - 45741359
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  45741229 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 45741328  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  45741329 tgcttcctgc-attttacactatcttttgtgc 45741359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 7232486 - 7232362
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  7232486 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 7232387  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  7232386 tgcttcctgc-attttacactatctt 7232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 26505159 - 26505035
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  26505159 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 26505060  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  26505059 tgcttcctgc-attttacactatctt 26505035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 15602912 - 15603022
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  15602912 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 15603011  T
Q  124 tgcttcctgca 134  Q
    |||||||||||    
T  15603012 tgcttcctgca 15603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 15354364 - 15354238
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15354364 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcatt 15354265  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  15354264 gtgcttcctgcaattttacactatctt 15354238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 5245325 - 5245451
Alignment:
Q  24 gctgctgtgtg-tttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    ||||||||||| |||||| ||||||| |||||||||  || |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5245325 gctgctgtgtgctttgatcttgaatcatgtgtgtgatcttctgtgtgaaatgtggtatatcttctgtttgaaccgttagatctttgatctaacggtcatt 5245424  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  5245425 gtgcttcctgcaattttacactatctt 5245451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 11415424 - 11415293
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||  ||||||||||||  ||||||||||| |||| |  ||||||||||||||||||||||||||||| |||||||||| ||    
T  11415424 gctgctgtgtatttgattttgtttcctgtgtgtgatcttttgtgtggagtatgttgcatcttctgtttgaaccgttagatctttgatctaacggtcactg 11415325  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
     ||||||||||| ||||||||||||| |||||    
T  11415324 cgcttcctgcaattttacactatcttttgtgc 11415293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 11430408 - 11430277
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||  ||||||||||||  ||||||||||| |||| |  ||||||||||||||||||||||||||||| |||||||||| ||    
T  11430408 gctgctgtgtatttgattttgtttcctgtgtgtgatcttttgtgtggagtatgttgcatcttctgtttgaaccgttagatctttgatctaacggtcactg 11430309  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
     ||||||||||| ||||||||||||| |||||    
T  11430308 cgcttcctgcaattttacactatcttttgtgc 11430277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 20591817 - 20591875
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatat 82  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  20591817 gctgctgtgtgtttgattttgaatcctgtatgtgattttttgtgtggaatatggtatat 20591875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 10441313 - 10441381
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    |||||| |||||||| ||| ||||||||||||||| ||||| |||| || ||||||| |||| ||||||    
T  10441313 tgtgtgaaatatggtttattttctgtttgaaccgtcagatcgttgatctgacggtcactgtgtttcctg 10441381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 5122911 - 5122942
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  5122911 ggacccttggatctttgatccagtggctgtga 5122942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 5157864 - 5157895
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  5157864 ggacccttggatctttgatccagtggctgtga 5157895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 11415284 - 11415253
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  11415284 ggacccttggatctttgatccagtggctgtga 11415253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 20591932 - 20591963
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  20591932 ggacccttggatctttgatccagtggctgtga 20591963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 26750628 - 26750597
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  26750628 ggacccttggatctttgatccagtggctgtga 26750597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 30307582 - 30307613
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  30307582 ggacccttggatctttgatccagtggctgtga 30307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 5245468 - 5245497
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  5245468 acccttggatctttgatccagtggctgtga 5245497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 15354222 - 15354193
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  15354222 acccttggatctttgatccagtggctgtga 15354193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 20591879 - 20591923
Alignment:
Q  111 ctaacggtcattgtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| |||||||||||||  ||||||||||||| |||||    
T  20591879 ctaacggtcactgtgcttcctgcatttttacactatcttttgtgc 20591923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 14452711 - 14452580
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  14452711 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 14452612  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||||||||| |||||    
T  14452611 tgcttcctgcaattttacactatcttttgtgc 14452580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 8227784 - 8227654
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  8227784 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 8227685  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  8227684 tgcttcctgc-attttacactatcttttgtgc 8227654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 9529498 - 9529628
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  9529498 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcagtg 9529597  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  9529598 tgcttcctgc-attttacactatcttttgtgc 9529628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 10599764 - 10599895
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  10599764 gctgctgtgtgtttgattttgaaccctgtgtgtaattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 10599863  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  10599864 tgcttcctgcatttttacactatcttttgtgc 10599895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 18045747 - 18045878
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18045747 gctgctgtgtgtttgattttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcattg 18045846  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||||||||| |||||    
T  18045847 tgcttcctgcaattttacactatcttttgtgc 18045878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 18061811 - 18061942
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18061811 gctgctgtgtgtttgattttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcattg 18061910  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||||||||| |||||    
T  18061911 tgcttcctgcaattttacactatcttttgtgc 18061942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 28358910 - 28359034
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  28358910 gctgctgtgtatttgattttgaatcctgtgcgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 28359009  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  28359010 tgcttcctgc-attttacactatctt 28359034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 28012108 - 28012231
Alignment:
Q  25 ctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgt 124  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  28012108 ctgctgtgtatttgattttgaatcctgtgcgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactgt 28012207  T
Q  125 gcttcctgcaaatttacactatctt 149  Q
    ||||||||| | |||||||||||||    
T  28012208 gcttcctgc-attttacactatctt 28012231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 4622749 - 4622879
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  4622749 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 4622848  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  4622849 tgcttcctgc-attttacactatcttttgtgc 4622879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 4633731 - 4633861
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  4633731 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 4633830  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  4633831 tgcttcctgc-attttacactatcttttgtgc 4633861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 18002101 - 18002231
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  18002101 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtgaaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 18002200  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  18002201 tgcttcctgc-attttacactatcttttgtgc 18002231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 4448723 - 4448847
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||    
T  4448723 gctgctgtgtatttgattttgaatcctgtgcgtgactttttgtgtggaatatggtatatcttctatttgaaccgttagatctttgatctaacggtcactg 4448822  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  4448823 tgcttcctgc-attttacactatctt 4448847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 8345491 - 8345620
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||  |  || |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  8345491 gctgctgtgtgtttgattttgaatcctgtgtg--atcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatcgttgatctaacggtcattg 8345588  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||||||||| |||||    
T  8345589 tgcttcctgcaattttacactatcttttgtgc 8345620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 10413175 - 10413305
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||| ||||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  10413175 gctgctgtgtgtttgattttgaattctgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 10413274  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  10413275 tgcttcctgc-attttacactatcttttgtgc 10413305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 4693579 - 4693705
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4693579 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcatt 4693678  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  4693679 gtgcttcctgcaattttacactatctt 4693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 34802209 - 34802083
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34802209 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcatt 34802110  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  34802109 gtgcttcctgcaattttacactatctt 34802083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 4683490 - 4683616
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  4683490 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcatt 4683589  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  4683590 gtgcttcctgcaattttacactatctt 4683616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 8581137 - 8581245
Alignment:
Q  47 tcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactat 146  Q
    ||||||||||||  ||||||||||| |||| |  || |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  8581137 tcctgtgtgtgatcttttgtgtggagtatgttgcatattctgtttgaaccgttagatctttgatctaacggtcattgtgcttcctgcaattttacactat 8581236  T
Q  147 cttgtgtgc 155  Q
     || |||||    
T  8581237 attttgtgc 8581245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 4888013 - 4888082
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||| |||||    
T  4888013 tctgtttgaaccgttagatctttgatctaacggtcactgtacttcctgc-attttacactatcttttgtgc 4888082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 1776165 - 1776224
Alignment:
Q  89 tttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||    
T  1776165 tttgaaccgttagatctttgatctaacggtcactgtgcttcctgc-attttacactatctt 1776224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 5517489 - 5517425
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||||||||||||||| |||||||||| |||| || |||||  |||||||||||||    
T  5517489 tctgtttgaaccgttagatctttgatctaacggtcactgtgttttctgcatttttacactatctt 5517425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 20053498 - 20053561
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||| | |||||||||||||    
T  20053498 tctgtttgaaccgttagatctttgatctaacggtcactgtgtttcctgc-attttacactatctt 20053561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 20076158 - 20076221
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||| | |||||||||||||    
T  20076158 tctgtttgaaccgttagatctttgatctaacggtcactgtgtttcctgc-attttacactatctt 20076221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 8345629 - 8345660
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  8345629 ggacccttggatctttgatccagtggctgtga 8345660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 9529638 - 9529669
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  9529638 ggacccttggatctttgatccagtggctgtga 9529669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 10413313 - 10413344
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  10413313 ggacccttggatctttgatccagtggctgtga 10413344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 10599904 - 10599935
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  10599904 ggacccttggatctttgatccagtggctgtga 10599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 14452571 - 14452540
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  14452571 ggacccttggatctttgatccagtggctgtga 14452540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 18002240 - 18002271
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  18002240 ggacccttggatctttgatccagtggctgtga 18002271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 18045887 - 18045918
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  18045887 ggacccttggatctttgatccagtggctgtga 18045918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 18061951 - 18061982
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  18061951 ggacccttggatctttgatccagtggctgtga 18061982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 27339913 - 27339883
Alignment:
Q  171 gacccttggatctttgatccagtggctgtga 201  Q
    |||||||||||||||||||||||||||||||    
T  27339913 gacccttggatctttgatccagtggctgtga 27339883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 4683632 - 4683661
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  4683632 acccttggatctttgatccagtggctgtga 4683661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 4693721 - 4693750
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  4693721 acccttggatctttgatccagtggctgtga 4693750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 34802066 - 34802037
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  34802066 acccttggatctttgatccagtggctgtga 34802037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 10722034 - 10721990
Alignment:
Q  84 ttctgtttgaaccgttagatctttgacctaacggtcattgtgctt 128  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||    
T  10722034 ttctgtttgaaccgtcagatcgttgatctgacggtcattgtgctt 10721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 24217301 - 24217257
Alignment:
Q  84 ttctgtttgaaccgttagatctttgacctaacggtcattgtgctt 128  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||    
T  24217301 ttctgtttgaaccgtcagatcgttgatctgacggtcattgtgctt 24217257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 23431686 - 23431555
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  23431686 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 23431587  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  23431586 tgcttcctgcatttttacactatcttttgtgc 23431555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 35397557 - 35397428
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  35397557 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttaaaccgttagatctttgatctaacggtcattg 35397458  T
Q  124 tgcttcctgcaaatttacactatcttgtgtg 154  Q
    |||||||||| | ||||||||||||| ||||    
T  35397457 tgcttcctgc-attttacactatcttttgtg 35397428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 32450485 - 32450355
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  32450485 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgatatatcttctgtttgaaccgttagatctttgatctaacggtcactg 32450386  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  32450385 tgcttcctgc-attttacactatcttttgtgc 32450355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 33772063 - 33772187
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  33772063 gctgctgtgtatttgattttgaatcctgtgcgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 33772162  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  33772163 tgcttcctgc-attttacactatctt 33772187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 29882977 - 29882847
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  29882977 gctgctgtgtgtttgattttgaatcttgtgtgtgattttttgtgtggaatatgctatatcttctgtttgaaccgttagatctttgatctaacggtcactg 29882878  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  29882877 tgcttcctgc-attttacactatcttttgtgc 29882847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 33787020 - 33787144
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  33787020 gctgctgtgtatttgattttgaatcctgtgcgtgacttattgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 33787119  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  33787120 tgcttcctgc-attttacactatctt 33787144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 20194675 - 20194549
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  20194675 gctgctgtgtgttttgatcttgaatcatgtgtgtgatattctgtgtgaaatatgatatatcttctgtttgaaccgttagatctttgatctaacggtcatt 20194576  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  20194575 gtgcttcctgcaattttacactatctt 20194549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 23431545 - 23431514
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  23431545 ggacccttggatctttgatccagtggctgtga 23431514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 29882837 - 29882806
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  29882837 ggacccttggatctttgatccagtggctgtga 29882806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 32450346 - 32450315
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  32450346 ggacccttggatctttgatccagtggctgtga 32450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 35397416 - 35397386
Alignment:
Q  171 gacccttggatctttgatccagtggctgtga 201  Q
    |||||||||||||||||||||||||||||||    
T  35397416 gacccttggatctttgatccagtggctgtga 35397386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 20194533 - 20194504
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  20194533 acccttggatctttgatccagtggctgtga 20194504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 23120546 - 23120677
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  23120546 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 23120645  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  23120646 tgcttcctgcatttttacactatcttttgtgc 23120677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 5392835 - 5392704
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  5392835 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 5392736  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  5392735 tgcttcctgcatttttacactatcttttgtgc 5392704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 12650080 - 12650210
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  12650080 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 12650179  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  12650180 tgcttcctgc-attttacactatcttttgtgc 12650210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 12665002 - 12665132
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  12665002 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 12665101  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  12665102 tgcttcctgc-attttacactatcttttgtgc 12665132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 24044371 - 24044497
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  24044371 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttttgtttgaaccgttagatctttgatctaacggtcatt 24044470  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    |||||||||| || |||||||||||||    
T  24044471 gtgcttcctgtaattttacactatctt 24044497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 33844200 - 33844330
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||| ||||||||||  ||||||||||||  ||||||||||| |||| |  || |||||||||||||||||||||||||| |||||||||||||    
T  33844200 gctgctgtgtatttgattttgtttcctgtgtgtgatcttttgtgtggagtatgatgcatattctgtttgaaccgttagatctttgatctaacggtcattg 33844299  T
Q  124 tgcttcctgcaaatttacactatcttgtgtg 154  Q
    |||||||||||| ||||||||||||| ||||    
T  33844300 tgcttcctgcaattttacactatcttttgtg 33844330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 34856307 - 34856432
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||| ||||| ||||||||||  |||||||| |||  ||||||||||| |||| |  || ||||||||||||||||||||  |||| |||||||||||||    
T  34856307 gctgttgtgtatttgattttgtttcctgtgtatgatcttttgtgtggagtatgttgcatattctgtttgaaccgttagattgttgatctaacggtcattg 34856406  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||||| |||||||||||||    
T  34856407 tgcttcctgcaattttacactatctt 34856432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 34871369 - 34871494
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||| ||||| ||||||||||  |||||||| |||  ||||||||||| |||| |  || ||||||||||||||||||||  |||| |||||||||||||    
T  34871369 gctgttgtgtatttgattttgtttcctgtgtatgatcttttgtgtggagtatgttgcatattctgtttgaaccgttagattgttgatctaacggtcattg 34871468  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||||| |||||||||||||    
T  34871469 tgcttcctgcaattttacactatctt 34871494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 12650219 - 12650250
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  12650219 ggacccttggatctttgatccagtggctgtga 12650250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 12665141 - 12665172
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  12665141 ggacccttggatctttgatccagtggctgtga 12665172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 23120686 - 23120717
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  23120686 ggacccttggatctttgatccagtggctgtga 23120717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 33844339 - 33844370
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  33844339 ggacccttggatctttgatccagtggctgtga 33844370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 24044514 - 24044543
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  24044514 acccttggatctttgatccagtggctgtga 24044543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 28480237 - 28480293
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtca 120  Q
    |||||| |||||||| | | ||||||||||||||| |||||||||| || |||||||    
T  28480237 tgtgtgaaatatggtgtgttttctgtttgaaccgtcagatctttgatctgacggtca 28480293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 52712 - 52581
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  52712 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 52613  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  52612 tgcttcctgcatttttacactatcttttgtgc 52581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 52572 - 52541
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  52572 ggacccttggatctttgatccagtggctgtga 52541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 26994558 - 26994689
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  26994558 gctgctgtgtgtttgattttgaatcctgtgtatgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 26994657  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  26994658 tgcttcctgcatttttacactatcttttgtgc 26994689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 27645595 - 27645726
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  27645595 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 27645694  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  27645695 tgcttcctgcatttttacactatcttttgtgc 27645726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 16763044 - 16763175
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  16763044 gctgctgtgtgtttgattttgaatcctgtgtgtaactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 16763143  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  16763144 tgcttcctgcatttttacactatcttttgtgc 16763175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 27028877 - 27029007
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  27028877 gctgctgtgtgtttgattttgaatcctgtgtatgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 27028976  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  27028977 tgcttcctgc-attttacactatcttttgtgc 27029007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 15403026 - 15402896
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  15403026 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 15402927  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  15402926 tgcttcctgc-attttacactatcttttgtgc 15402896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 15414813 - 15414683
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  15414813 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 15414714  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  15414713 tgcttcctgc-attttacactatcttttgtgc 15414683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 15430406 - 15430276
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  15430406 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 15430307  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  15430306 tgcttcctgc-attttacactatcttttgtgc 15430276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 16744642 - 16744773
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||    
T  16744642 gctgctgtgtgtttgattttgaatcctgtgtgtaactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaatggtcactg 16744741  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  16744742 tgcttcctgcatttttacactatcttttgtgc 16744773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 26983652 - 26983782
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  26983652 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 26983751  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||| ||| | ||||||||||||| |||||    
T  26983752 tgcttcgtgc-attttacactatcttttgtgc 26983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 27034713 - 27034843
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  27034713 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 27034812  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||| ||| | ||||||||||||| |||||    
T  27034813 tgcttcgtgc-attttacactatcttttgtgc 27034843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 14135485 - 14135355
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  14135485 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 14135386  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  14135385 tgcttcctgc-attttacactatcttttgtgc 14135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 14147557 - 14147427
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  14147557 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 14147458  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  14147457 tgcttcctgc-attttacactatcttttgtgc 14147427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 16560980 - 16561110
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  16560980 gctgctgtgtgttagattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 16561079  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  16561080 tgcttcctgc-attttacactatcttttgtgc 16561110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 28159501 - 28159625
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  28159501 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcacta 28159600  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  28159601 tgcttcctgc-attttacactatctt 28159625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 28170542 - 28170666
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  28170542 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcacta 28170641  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  28170642 tgcttcctgc-attttacactatctt 28170666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 4217994 - 4217870
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||| |   |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||    
T  4217994 gctgctgtgtgtttgattttgaatcctatacatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacgatcactg 4217895  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    ||||| |||| | |||||||||||||    
T  4217894 tgctttctgc-attttacactatctt 4217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 21709975 - 21709907
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    |||||| |||||||| | | ||||||||||||||| |||||||||| || ||||||| |||||| ||||    
T  21709975 tgtgtgaaatatggtgtgttttctgtttgaaccgtcagatctttgatctgacggtcactgtgctgcctg 21709907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 23926676 - 23926744
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    |||||| |||||||  ||| ||||||||||||||| ||||| |||| || |||||||||||| ||||||    
T  23926676 tgtgtgaaatatggcgtattttctgtttgaaccgtcagatcgttgatctgacggtcattgtgtttcctg 23926744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 15430267 - 15430236
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  15430267 ggacccttggatctttgatccagtggctgtga 15430236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 16561119 - 16561150
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  16561119 ggacccttggatctttgatccagtggctgtga 16561150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 16744781 - 16744812
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  16744781 ggacccttggatctttgatccagtggctgtga 16744812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 16763183 - 16763214
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  16763183 ggacccttggatctttgatccagtggctgtga 16763214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 26983791 - 26983822
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  26983791 ggacccttggatctttgatccagtggctgtga 26983822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 27029016 - 27029047
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  27029016 ggacccttggatctttgatccagtggctgtga 27029047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 27034852 - 27034883
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  27034852 ggacccttggatctttgatccagtggctgtga 27034883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 27645735 - 27645766
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  27645735 ggacccttggatctttgatccagtggctgtga 27645766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 26994700 - 26994729
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  26994700 acccttggatctttgatccagtggctgtga 26994729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 16588135 - 16588183
Alignment:
Q  84 ttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    ||||||||||||||| ||||||| || || ||||||| |||||||||||    
T  16588135 ttctgtttgaaccgtcagatcttggatctgacggtcactgtgcttcctg 16588183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 16607245 - 16607197
Alignment:
Q  84 ttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    ||||||||||||||| ||||||| || || ||||||| |||||||||||    
T  16607245 ttctgtttgaaccgtcagatcttggatctgacggtcactgtgcttcctg 16607197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 25551130 - 25551186
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtca 120  Q
    |||||| |||||||| ||| ||||||||||||||| ||||  |||| ||||||||||    
T  25551130 tgtgtgaaatatggtgtattttctgtttgaaccgtcagattgttgatctaacggtca 25551186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 24582949 - 24582818
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||    
T  24582949 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtgtatcttctgtttgaaccgttagatctttgatctaacggtcactg 24582850  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  24582849 tgcttcctgcatttttacactatcttttgtgc 24582818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 24597777 - 24597646
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||    
T  24597777 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtgtatcttctgtttgaaccgttagatctttgatctaacggtcactg 24597678  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  24597677 tgcttcctgcatttttacactatcttttgtgc 24597646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 13440169 - 13440299
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  13440169 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 13440268  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  13440269 tgcttcctgc-attttacactatcttttgtgc 13440299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 30277410 - 30277540
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||    
T  30277410 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttgatctaacggtcactg 30277509  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  30277510 tgcttcctgc-attttacactatcttttgtgc 30277540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 20307940 - 20308070
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  20307940 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 20308039  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  20308040 tgcttcctgc-attttacactatcttttgtgc 20308070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 11926806 - 11926930
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  11926806 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 11926905  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  11926906 tgcttcctgc-attttacactatctt 11926930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 24810396 - 24810272
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  24810396 gctgctgtgtgtttgattttggatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 24810297  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| |||||||||||||||    
T  24810296 tgcttcctgc-aatttacactatctt 24810272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 5200949 - 5200823
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||||||| ||| ||||||| |||||||||  || |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5200949 gctgctgtgtgttttgatcttgaatcatgtgtgtgatcttctgtgtgaaatatggtatatcttgtgtttgaaccgttagatctttgatctaacggtcatt 5200850  T
Q  123 gtgcttcctgcaaatttacactatctt 149  Q
    ||||||||||||| |||||||||||||    
T  5200849 gtgcttcctgcaattttacactatctt 5200823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 5405020 - 5404950
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  5405020 tctgtttgaaccgttagatctttgatctaacggtcattgtgcttcctgcaattttacactatcttttgtgc 5404950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 17008616 - 17008685
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||| |||||    
T  17008616 tctgtttgaaccgttagatctttgatctaacggtcactgtacttcctgc-attttacactatcttttgtgc 17008685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 17022580 - 17022649
Alignment:
Q  85 tctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||| |||||    
T  17022580 tctgtttgaaccgttagatctttgatctaacggtcactgtacttcctgc-attttacactatcttttgtgc 17022649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 24923589 - 24923657
Alignment:
Q  64 tgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    |||||| |||||||| | | ||||||||||||||| |||||||||| || ||||||| |||||| ||||    
T  24923589 tgtgtgaaatatggtgtgttttctgtttgaaccgtcagatctttgatctgacggtcactgtgctgcctg 24923657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 5404941 - 5404910
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  5404941 ggacccttggatctttgatccagtggctgtga 5404910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 13440308 - 13440339
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  13440308 ggacccttggatctttgatccagtggctgtga 13440339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 17008693 - 17008724
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  17008693 ggacccttggatctttgatccagtggctgtga 17008724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 20308079 - 20308110
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  20308079 ggacccttggatctttgatccagtggctgtga 20308110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 24582809 - 24582778
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  24582809 ggacccttggatctttgatccagtggctgtga 24582778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 24597637 - 24597606
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  24597637 ggacccttggatctttgatccagtggctgtga 24597606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 30277549 - 30277580
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  30277549 ggacccttggatctttgatccagtggctgtga 30277580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 5200806 - 5200777
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  5200806 acccttggatctttgatccagtggctgtga 5200777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 12426374 - 12426345
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  12426374 acccttggatctttgatccagtggctgtga 12426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 40562226 - 40562255
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  40562226 acccttggatctttgatccagtggctgtga 40562255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 14659796 - 14659760
Alignment:
Q  193 tggctgtgaggtttggtttccatgtgcttgatctgtg 229  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  14659796 tggctgtgatgttttgtttccatgtgcttgatctgtg 14659760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 10903 - 11034
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||    
T  10903 gctgctgtgtgtttgattttgaatcctgtgtgtgattttttgtgtggaatatggtatatcttctatttgaaccgttagatctttgatctaacggtcactg 11002  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||  ||||||||||||| |||||    
T  11003 tgcttcctgcatttttacactatcttttgtgc 11034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 11043 - 11074
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  11043 ggacccttggatctttgatccagtggctgtga 11074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 14360534 - 14360403
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||| ||    
T  14360534 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatcaaagatctaacggtcactg 14360435  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||||| ||||||| ||||| |||||    
T  14360434 tgcttcctgcaattttacaccatcttttgtgc 14360403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 40699342 - 40699466
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  40699342 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 40699441  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| |||||||||||||||    
T  40699442 tgcttcctgc-aatttacactatctt 40699466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 3716740 - 3716864
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  3716740 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtggaatttggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 3716839  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| | |||||||||||||    
T  3716840 tgcttcctgc-attttacactatctt 3716864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 15778496 - 15778627
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacct-aacggtcatt 122  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  15778496 gctgctgtgtgtttgattttgaatcatgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaaacggtcact 15778595  T
Q  123 gtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||| | ||||||||||||| |||||    
T  15778596 gtgcttcctgc-attttacactatcttttgtgc 15778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 15768083 - 15768214
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacct-aacggtcatt 122  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| || |    
T  15768083 gctgctgtgtgtttgattttgaatcatgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaaacggccact 15768182  T
Q  123 gtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||| | ||||||||||||| |||||    
T  15768183 gtgcttcctgc-attttacactatcttttgtgc 15768214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 21925913 - 21926045
Alignment:
Q  24 gctgctgtgtgtttgatttt-gaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcatt 122  Q
    |||||||||| ||||||||| |  ||||||||||||  ||||||||||| |||| |  || |||||||||||||||||||||||||| ||||||||||||    
T  21925913 gctgctgtgtatttgatttttgtttcctgtgtgtgatcttttgtgtggagtatgttgcatattctgtttgaaccgttagatctttgatctaacggtcatt 21926012  T
Q  123 gtgcttcctgcaaatttacactatcttgtgtgc 155  Q
    ||||||||||||| ||||||||||||| |||||    
T  21926013 gtgcttcctgcaattttacactatcttttgtgc 21926045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 28262015 - 28262146
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||| ||||| ||||||||||  ||||||||||||  ||||||||||| |||| |  ||||||||||||||||||||||||||||| |||||||||| ||    
T  28262015 gctgttgtgtatttgattttgtttcctgtgtgtgatcttttgtgtggagtatgttgcatcttctgtttgaaccgttagatctttgatctaacggtcactg 28262114  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
     ||||||||||| ||||||||||||| |||||    
T  28262115 cgcttcctgcaattttacactatcttttgtgc 28262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 31340566 - 31340497
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttga 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340566 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttga 31340497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 17974744 - 17974841
Alignment:
Q  35 tttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtgcttcctg 132  Q
    |||||| ||||||| ||||||||   |  |||||| |||||||| ||| ||||||||||||||| ||||| |||| || ||||||| |||| ||||||    
T  17974744 tttgatcttgaatcatgtgtgtgttctcctgtgtgaaatatggtgtattttctgtttgaaccgtcagatcgttgatctgacggtcactgtgtttcctg 17974841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 14360394 - 14360363
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  14360394 ggacccttggatctttgatccagtggctgtga 14360363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 15768223 - 15768254
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  15768223 ggacccttggatctttgatccagtggctgtga 15768254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 15778636 - 15778667
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  15778636 ggacccttggatctttgatccagtggctgtga 15778667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 21926055 - 21926086
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  21926055 ggacccttggatctttgatccagtggctgtga 21926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 31340442 - 31340411
Alignment:
Q  170 ggacccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||||    
T  31340442 ggacccttggatctttgatccagtggctgtga 31340411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 2464 - 2340
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  2464 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 2365  T
Q  124 tgcttcctgcaaatttacactatctt 149  Q
    |||||||||| |||||||||||||||    
T  2364 tgcttcctgc-aatttacactatctt 2340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 28149245 - 28149375
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  28149245 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 28149344  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  28149345 tgcttcctgc-attttacactatcttttgtgc 28149375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 28159719 - 28159849
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  28159719 gctgctgtgtgtttgattttgaatcctgtgcatgactttttgtgtgaaatatggtatatcttctgtttgaaccgttagatctttgatctaacggtcactg 28159818  T
Q  124 tgcttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||||| | ||||||||||||| |||||    
T  28159819 tgcttcctgc-attttacactatcttttgtgc 28159849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 20322420 - 20322294
Alignment:
Q  26 tgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattgtg 125  Q
    ||||||||||||||||||||||||||||||  | |||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  20322420 tgctgtgtgtttgattttgaatcctgtgtg--attttttgtgtgaaatatgctatatcttctgtctgaaccgttagatctttgatctaacggtcactgtg 20322323  T
Q  126 cttcctgcaaatttacactatcttgtgtgc 155  Q
    |||||||| | ||||||||||||| |||||    
T  20322322 cttcctgc-attttacactatcttttgtgc 20322294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6314968 - 6314934
Alignment:
Q  1 ttcaaagaagatatgccttaggagctgctgtgtgt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6314968 ttcaaagaagatatgccttaggaggtgctgtgtgt 6314934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 17338 - 17424
Alignment:
Q  24 gctgctgtgtgttt-gattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttga 109  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17338 gctgctgtgtgttttgattttgaatcctgtgtgtgattttttgtgtggaatatgttatatcttctgtttgaaccgttagatctttga 17424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1848 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1848
Description:

Target: scaffold1848; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 740 - 866
Alignment:
Q  24 gctgctgtgtgtttgattttgaatcctgtgtgtgactttttgtgtggaatatggtatatcttctgtttgaaccgttagatctttgacctaacggtcattg 123  Q
    |||||||||||||||||||||  ||||||||||||  ||||| ||||| |||| |  ||   |||||||||||||||||||||||| |||||||||||||    
T  740 gctgctgtgtgtttgattttgtttcctgtgtgtgatcttttgcgtggagtatgctgcataaactgtttgaaccgttagatctttgatctaacggtcattg 839  T
Q  124 tgcttcctgcaa-atttacactatctt 149  Q
    ||||||||||||  |||||||||||||    
T  840 tgcttcctgcaatttttacactatctt 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 3601 - 3630
Alignment:
Q  172 acccttggatctttgatccagtggctgtga 201  Q
    ||||||||||||||||||||||||||||||    
T  3601 acccttggatctttgatccagtggctgtga 3630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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