View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_3 (Length: 426)
Name: NF19125_low_3
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 5675104 - 5675525
Alignment:
| Q |
1 |
ccaagtttctttgaaaccgaacttataaacgatttacgaggtagtggaggcttatcagcagaatgagaatgagaaggtgaagcatttgcaataggactgt |
100 |
Q |
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| T |
5675104 |
ccaagtttctttgaaaccgaacttataaacgatttacgaggtagtggaggcttatcagcagaatgagaatgagaaggtgaagcatttgcaataggactgt |
5675203 |
T |
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| Q |
101 |
taaccgttgattttactgttgatttaacagttgatttaagcgtggaaatctcgatctcttttagtttcattttcaacttcactacctctaatttgaggtc |
200 |
Q |
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| T |
5675204 |
taaccgttgattttactgttgatttaacagttgatttaagcgtggaaatctcgatctcttttagtttcattttcaacttcactacctctaatttgaggtc |
5675303 |
T |
|
| Q |
201 |
ttcattttctcttcgcaagcttgtaagttcattcgaaacttgaatatcacctgaatatacatttagtttggtgtgaatagaaggtgattctgcagtttca |
300 |
Q |
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| T |
5675304 |
ttcattttctcttcgcaagcttgtaagttcatttgaaacttgaatatcacctgaatatacatttagtttggtgtgaatagaaggtgattctgcagtttca |
5675403 |
T |
|
| Q |
301 |
cttccattcattgcatcgcgaagtctttgctgttcgtaatagagaacttggacaacggtttggactggtaaccggtcgttttgagctgcatgtgcacatg |
400 |
Q |
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| T |
5675404 |
cttccattcattgcatcgcgaagtctttgctgttcgtaatagagaacttggacaacagtttggactggtaaccggtcgttttgagctgcatgtgcacatg |
5675503 |
T |
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| Q |
401 |
cttctcgtgatattcttcgaca |
422 |
Q |
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| T |
5675504 |
cttctcgtgataatctttgaca |
5675525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 39780545 - 39780485
Alignment:
| Q |
154 |
atctcttttagtttcattttcaacttcactacctctaatttgaggtcttcattttctcttc |
214 |
Q |
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|||||||||| ||| ||||| | ||||||| ||||||||| || |||||||||||||||| |
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| T |
39780545 |
atctcttttatttttattttaagtttcactatctctaatttcagttcttcattttctcttc |
39780485 |
T |
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