View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_5 (Length: 374)
Name: NF19125_low_5
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 52120142 - 52120483
Alignment:
| Q |
16 |
atgatcaagctcaaacaaatccgaactcgaacaactcaaagcatcatcatcttcatcttcatcgtcatcttcaccgttatcataaaatctttctttagcc |
115 |
Q |
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| T |
52120142 |
atgatcaagctcaaacaaatccgaactcgaacaactcaaagcatcatcatcttcatcttcatcgtcatcttcaccgttatcataaaatctttctttagcc |
52120241 |
T |
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| Q |
116 |
ataacaaccttgttaatattcttcagctcattaaccgaagaatttctcgtaatctttcgaatagtactaggttgatgttgttgttcagaatcctcaccta |
215 |
Q |
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| T |
52120242 |
ataacaaccttgttaatattcttcagctcattaaccgaagaatttctcgtaatctttcgaatagtactaggttgatgttgttgttcagaatcctcaccta |
52120341 |
T |
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| Q |
216 |
ggattacgctaacaggatagaatctaaccgatcttttaacaccattgttggactttgaagttgttttactcatgcaagaccttctagaatatgaagaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52120342 |
ggattacgctaacaggatagaatctaaccgatcttttaacaccattgttggactttgaagttgttttactcatgcaagaccttctagaatatgaagaaac |
52120441 |
T |
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| Q |
316 |
tgaggaagaaaaacaaggtgattttgatttgtgatcaaaact |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
52120442 |
tgaggaagaaaaacaaggtgattttgatttgtgatcaaaact |
52120483 |
T |
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