View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_6 (Length: 351)
Name: NF19125_low_6
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 9579348 - 9579645
Alignment:
| Q |
16 |
atgcacatatttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaatt |
115 |
Q |
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| T |
9579348 |
atgcacatatttagcaaaaacaaacatccactgatacccctaagcatgctagcgggttcgaccaccactggttcaatccatacataaactttgacgactt |
9579447 |
T |
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| Q |
116 |
tattctcaaccaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttcca |
215 |
Q |
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| T |
9579448 |
taatctcaaccaactcgatgataaaagattgacactatcgacaatcgattcagtatcc--aatccttataatgaaaaatcctttcatttctcgccttcca |
9579545 |
T |
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| Q |
216 |
aatgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataaagttgatggtacac |
315 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9579546 |
aatgctccacatactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtca--cgaaccagccctgtaaaggtaataaagttgatggtacac |
9579643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 9584883 - 9585116
Alignment:
| Q |
16 |
atgcacatatttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaa---tccatacataaactttgacga |
112 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9584883 |
atgcaaatatttagcaaaaacaaacatcccccgatacccctaagcatgctagcgggttcgaccaccactggttcaatattccatacataaactttgacga |
9584982 |
T |
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| Q |
113 |
atttattctcaaccaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgcctt |
212 |
Q |
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| T |
9584983 |
ctttaatctcaaccaactcaatgataaaagcttgacactatggacaagcaattcagtatcc--aatccttatgatgaaaaacccttgcatttctcgcctt |
9585080 |
T |
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| Q |
213 |
ccaaatgctccacatactcgcgaaccaaatggcttc |
248 |
Q |
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| T |
9585081 |
caaaatgctccacatactcgcgaaccaaatggcttc |
9585116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 32718921 - 32718614
Alignment:
| Q |
18 |
gcacatatttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaattta |
117 |
Q |
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||||||||||||| | ||||||||||||| ||||| |||||||| |||| |||||| |||| |||| ||||| ||||| ||||||||||||| | || |
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| T |
32718921 |
gcacatatttagcgagaacaaacatcccctgatacctctaagcatgctagagggttcaaccagcact--ttcaaatcatacttaaactttgacgactcta |
32718824 |
T |
|
| Q |
118 |
ttctcaaccaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaa |
217 |
Q |
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|||| |||||| | |||||||||||||||||||| | |||| ||||| ||| ||| ||||||||||||||||||| | | |||||||||||| ||| |
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| T |
32718823 |
atctctgccaactccacgataaaagcttgacactgtccataatcgattcatcatctcaa-tccttatgatgaaaaatccttgcatttctcgccttcgaaa |
32718725 |
T |
|
| Q |
218 |
tgctccacatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaataaagttgatggtacacat |
317 |
Q |
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|| ||||||||||||||||||| |||||||| |||||||||| |||||||| || | | |||||||||||||||| |||||||||| |||||||| ||| |
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| T |
32718724 |
tgttccacatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccctgtaaatgtaataaagtggatggtactcat |
32718625 |
T |
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| Q |
318 |
attgtgaaaca |
328 |
Q |
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||||||||||| |
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| T |
32718624 |
attgtgaaaca |
32718614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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