View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_7 (Length: 336)
Name: NF19125_low_7
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 24268278 - 24268092
Alignment:
| Q |
14 |
gaataagttatatagattaataggttaaagtcaatttaaacaataataggctatatgatacctgtgagtaaaactagtactccaatttggacttaaaatt |
113 |
Q |
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| T |
24268278 |
gaataagttatatagattaataggttaaagtcaatttaaacaataataggttatatgaaacctgtgagtaaaactagtactccaatttggacttaaaatt |
24268179 |
T |
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| Q |
114 |
cattggtagtttgagtcttgttatccttcttattttataaaaggtgtacgtggctgagtcagactttgttacttctatctggttgct |
200 |
Q |
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| T |
24268178 |
cattggtagtttgagtcttgttatccttcttattttataaaaggtgtacgtggctgagtcagactttgctacttctatctggttgct |
24268092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 24344908 - 24344722
Alignment:
| Q |
14 |
gaataagttatatagattaataggttaaagtcaatttaaacaataataggctatatgatacctgtgagtaaaactagtactccaatttggacttaaaatt |
113 |
Q |
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| T |
24344908 |
gaataagttatatagattaataggttaaagtcaatttaaacaataataggttatatgaaacctgtgagtaaaactagtactccaatttggacttaaaatt |
24344809 |
T |
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| Q |
114 |
cattggtagtttgagtcttgttatccttcttattttataaaaggtgtacgtggctgagtcagactttgttacttctatctggttgct |
200 |
Q |
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| T |
24344808 |
cattggtagtttgagtcttgttatccttcttattttataaaaggtgtacgtggctgagtcagactttgctacttctatctggttgct |
24344722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 24268098 - 24268036
Alignment:
| Q |
257 |
ggttgctgctggtgaatgtaaaatgattgtgccataataaaccaaggcatgattaagcaatat |
319 |
Q |
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| T |
24268098 |
ggttgctgctggtgaatgtaaaatgattgtgccataataaaccaaggcatgattaagcaatat |
24268036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 24344728 - 24344666
Alignment:
| Q |
257 |
ggttgctgctggtgaatgtaaaatgattgtgccataataaaccaaggcatgattaagcaatat |
319 |
Q |
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| T |
24344728 |
ggttgctgctggtgaatgtaaaatgattgtgccataataaaccaaggcatgattaagcaatat |
24344666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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