View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19125_low_8 (Length: 331)
Name: NF19125_low_8
Description: NF19125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19125_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 1960598 - 1960293
Alignment:
| Q |
18 |
catacatgcaaccatctttccattgtttgtaaattcttaaatgcttcggctttaaaaaccagtcttatctgctatcggtgtcaattgtatgaaaatatca |
117 |
Q |
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| T |
1960598 |
catatatgcaaccatctttccattgtttgtaaattcttagatgcttcggctttaaaaaccagtcttatctgctatcggtgtcaattgtatgaaaatatca |
1960499 |
T |
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| Q |
118 |
tcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgttagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960498 |
tcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgttagta |
1960399 |
T |
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| Q |
218 |
atgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagttaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960398 |
atgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagttaag |
1960299 |
T |
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| Q |
318 |
aataat |
323 |
Q |
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|||||| |
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| T |
1960298 |
aataat |
1960293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 5897278 - 5897143
Alignment:
| Q |
61 |
cttcggctttaaaaaccagtcttatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttt |
160 |
Q |
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| T |
5897278 |
cttcagctctaaaaaccagtcttatctgctatcagtgtctattatatggaaat--catcgcacttgtat--atgttcttcataactaaaccatagtctta |
5897183 |
T |
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| Q |
161 |
tccactatccctgtttattgtatggaaatcatcatacttt |
200 |
Q |
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| T |
5897182 |
tccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
285 |
agacaaatacataagttatcaaataaagttaaga |
318 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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